Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   P7Y79_RS02370 Genome accession   NZ_CP121207
Coordinates   488633..489637 (+) Length   334 a.a.
NCBI ID   WP_074481405.1    Uniprot ID   Q9LCC3
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 483633..494637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS02340 (P7Y79_02340) - 483646..484074 (-) 429 WP_278007656.1 MarR family transcriptional regulator -
  P7Y79_RS02345 (P7Y79_02345) - 484200..484628 (-) 429 WP_166043188.1 MarR family transcriptional regulator -
  P7Y79_RS02350 (P7Y79_02350) - 484802..485530 (-) 729 WP_278007657.1 DUF554 domain-containing protein -
  P7Y79_RS02355 (P7Y79_02355) - 485701..486591 (+) 891 WP_278007658.1 LysR family transcriptional regulator -
  P7Y79_RS02360 (P7Y79_02360) - 486599..487102 (-) 504 WP_074602562.1 NUDIX domain-containing protein -
  P7Y79_RS02365 (P7Y79_02365) - 487208..488293 (-) 1086 WP_258250310.1 Xaa-Pro peptidase family protein -
  P7Y79_RS02370 (P7Y79_02370) ccpA 488633..489637 (+) 1005 WP_074481405.1 catabolite control protein A Regulator
  P7Y79_RS02375 (P7Y79_02375) - 489732..490730 (+) 999 WP_074564172.1 glycosyltransferase -
  P7Y79_RS02380 (P7Y79_02380) - 490732..492066 (+) 1335 WP_278007659.1 glycosyltransferase family 4 protein -
  P7Y79_RS02385 (P7Y79_02385) thrS 492418..494364 (+) 1947 WP_157629248.1 threonine--tRNA ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36699.75 Da        Isoelectric Point: 5.2999

>NTDB_id=811085 P7Y79_RS02370 WP_074481405.1 488633..489637(+) (ccpA) [Streptococcus ruminicola strain CNU_77-47]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVADVVDILAKNNKDIAFVSGPLIDDINGKVRLAGYKEGLEKNNLSFKEGLVFEANYNYKDGYELAQRVMNSG
ATAAYVAEDELAAGLLNGLFAAGKKVPEDFEILTSNDSPITSYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
ILNHGLKLRGTTRQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=811085 P7Y79_RS02370 WP_074481405.1 488633..489637(+) (ccpA) [Streptococcus ruminicola strain CNU_77-47]
ATGAACACTGATGATACGATTACAATTTATGATGTTGCACGAGAAGCAGGCGTCTCAATGGCAACAGTTAGTCGTGTTGT
AAATGGCAATAAAAATGTAAAGGAAAACACTCGTAAAAAAGTCCTTGAAGTTATTGACCGTTTAGACTATCGTCCAAATG
CAGTTGCTCGTGGTTTGGCAAGTAAAAAAACTACGACAGTTGGTGTTGTTATTCCAAATATCGCTAATAGCTATTTCTCA
ATTTTAGCGAAAGGTATTGACGATATTGCTGCAATGTACAAATACAATATCGTTCTTGCGTCAAGTGATGAAGATGACGA
TAAAGAAGTTAATGTTGTTAACACTTTGTTTGCAAAACAAGTGGACGGTATTATCTTCATGGGACACCATTTAACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTGGTTCTAGCAGGAACAGTTGATTTAGAACACCAACTTCCAAGT
GTTAATATTGATTACAAAGCTGCCGTGGCTGATGTTGTTGATATTTTGGCTAAAAATAACAAAGATATTGCCTTTGTTTC
AGGACCACTTATTGATGACATTAACGGTAAAGTTCGTCTTGCAGGATACAAAGAAGGACTTGAAAAGAACAACCTATCAT
TCAAAGAAGGACTTGTATTTGAAGCTAACTACAACTACAAAGATGGTTATGAACTAGCTCAACGCGTGATGAATTCAGGT
GCTACAGCTGCATATGTTGCTGAAGACGAACTAGCTGCAGGTCTTTTGAATGGATTGTTTGCCGCAGGTAAAAAAGTTCC
TGAAGACTTTGAAATTCTTACAAGTAATGATTCACCAATCACATCATACACTCGTCCAAACCTAAGCTCAATTAGCCAAC
CGGTTTATGACCTTGGTGCGGTAAGTATGCGTATGTTGACTAAAATCATGAACAAAGAAGAACTTGAAGAAAAAGAAATT
ATTCTTAATCATGGTCTTAAATTGCGTGGTACGACACGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q9LCC3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.641

100

0.796

  ccpA Streptococcus pneumoniae D39

76.946

100

0.769

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.102

0.554