Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   P7F77_RS08155 Genome accession   NZ_CP121204
Coordinates   1675742..1676239 (-) Length   165 a.a.
NCBI ID   WP_001796472.1    Uniprot ID   A0A5F0HJ55
Organism   Staphylococcus aureus strain SA0907     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1670742..1681239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F77_RS08130 (P7F77_08135) gcvPB 1670904..1672376 (-) 1473 WP_000202176.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  P7F77_RS08135 (P7F77_08140) gcvPA 1672369..1673715 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  P7F77_RS08140 (P7F77_08145) gcvT 1673735..1674826 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  P7F77_RS08145 (P7F77_08150) - 1674985..1675509 (-) 525 WP_001015120.1 shikimate kinase -
  P7F77_RS08150 (P7F77_08155) - 1675499..1675645 (-) 147 WP_001789879.1 hypothetical protein -
  P7F77_RS08155 (P7F77_08160) comGF 1675742..1676239 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7F77_RS08160 (P7F77_08165) comGE 1676157..1676456 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P7F77_RS08165 (P7F77_08170) comGD 1676443..1676889 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  P7F77_RS08170 (P7F77_08175) comGC 1676867..1677178 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  P7F77_RS08175 (P7F77_08180) - 1677192..1677710 (-) 519 Protein_1607 type II secretion system F family protein -
  P7F77_RS08180 (P7F77_08185) - 1677813..1678985 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  P7F77_RS08185 (P7F77_08190) - 1678999..1679592 (-) 594 Protein_1609 type II secretion system F family protein -
  P7F77_RS08190 (P7F77_08195) comGA 1679564..1680538 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  P7F77_RS08195 (P7F77_08200) - 1680590..1681213 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19169.89 Da        Isoelectric Point: 10.1358

>NTDB_id=811043 P7F77_RS08155 WP_001796472.1 1675742..1676239(-) (comGF) [Staphylococcus aureus strain SA0907]
MILSKVTNKYVPFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=811043 P7F77_RS08155 WP_001796472.1 1675742..1676239(-) (comGF) [Staphylococcus aureus strain SA0907]
ATGATATTAAGCAAAGTGACCAACAAATATGTGCCATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACAATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HJ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

95.758

100

0.958