Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   P8R99_RS04395 Genome accession   NZ_CP121160
Coordinates   875759..876793 (-) Length   344 a.a.
NCBI ID   WP_017647021.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 870759..881793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS04360 - 871509..871811 (-) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  P8R99_RS04365 - 871804..872100 (-) 297 WP_001140526.1 YlxR family protein -
  P8R99_RS04370 nusA 872122..873273 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  P8R99_RS04375 rimP 873309..873785 (-) 477 WP_047210184.1 ribosome maturation factor RimP -
  P8R99_RS04385 trmB 874276..874911 (-) 636 WP_017647022.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  P8R99_RS04390 - 874901..875701 (-) 801 WP_000155919.1 cell cycle regulator CcrZ -
  P8R99_RS04395 pptB 875759..876793 (-) 1035 WP_017647021.1 ABC transporter permease Regulator
  P8R99_RS04400 pptA 876795..877520 (-) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  P8R99_RS04405 - 877592..877778 (+) 187 Protein_861 hypothetical protein -
  P8R99_RS04410 - 877830..878333 (-) 504 WP_017647020.1 hypothetical protein -
  P8R99_RS04415 - 878669..879088 (+) 420 WP_017647019.1 HIT family protein -
  P8R99_RS04420 - 879085..879381 (+) 297 WP_017647018.1 hypothetical protein -
  P8R99_RS04425 - 879445..880752 (-) 1308 WP_278043361.1 LCP family protein -
  P8R99_RS04430 - 880761..881282 (-) 522 WP_017647017.1 GNAT family N-acetyltransferase -
  P8R99_RS04435 tsaE 881275..881718 (-) 444 WP_032459127.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40232.62 Da        Isoelectric Point: 10.4988

>NTDB_id=810666 P8R99_RS04395 WP_017647021.1 875759..876793(-) (pptB) [Streptococcus agalactiae strain S5]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=810666 P8R99_RS04395 WP_017647021.1 875759..876793(-) (pptB) [Streptococcus agalactiae strain S5]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGGATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTCTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485

  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483