Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P8R99_RS04400 Genome accession   NZ_CP121160
Coordinates   876795..877520 (-) Length   241 a.a.
NCBI ID   WP_000912307.1    Uniprot ID   A0AAV3JGZ9
Organism   Streptococcus agalactiae strain S5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 871795..882520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS04365 - 871804..872100 (-) 297 WP_001140526.1 YlxR family protein -
  P8R99_RS04370 nusA 872122..873273 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  P8R99_RS04375 rimP 873309..873785 (-) 477 WP_047210184.1 ribosome maturation factor RimP -
  P8R99_RS04385 trmB 874276..874911 (-) 636 WP_017647022.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  P8R99_RS04390 - 874901..875701 (-) 801 WP_000155919.1 cell cycle regulator CcrZ -
  P8R99_RS04395 pptB 875759..876793 (-) 1035 WP_017647021.1 ABC transporter permease Regulator
  P8R99_RS04400 pptA 876795..877520 (-) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  P8R99_RS04405 - 877592..877778 (+) 187 Protein_861 hypothetical protein -
  P8R99_RS04410 - 877830..878333 (-) 504 WP_017647020.1 hypothetical protein -
  P8R99_RS04415 - 878669..879088 (+) 420 WP_017647019.1 HIT family protein -
  P8R99_RS04420 - 879085..879381 (+) 297 WP_017647018.1 hypothetical protein -
  P8R99_RS04425 - 879445..880752 (-) 1308 WP_278043361.1 LCP family protein -
  P8R99_RS04430 - 880761..881282 (-) 522 WP_017647017.1 GNAT family N-acetyltransferase -
  P8R99_RS04435 tsaE 881275..881718 (-) 444 WP_032459127.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26835.26 Da        Isoelectric Point: 4.5704

>NTDB_id=810667 P8R99_RS04400 WP_000912307.1 876795..877520(-) (pptA) [Streptococcus agalactiae strain S5]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=810667 P8R99_RS04400 WP_000912307.1 876795..877520(-) (pptA) [Streptococcus agalactiae strain S5]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAAACACCAAGTCTCTATGAGGAACTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.824

99.17

0.772
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768