Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RRL07_RS16115 Genome accession   NZ_CP135458
Coordinates   3255789..3257813 (-) Length   674 a.a.
NCBI ID   WP_315671092.1    Uniprot ID   -
Organism   Escherichia coli strain isolateI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3250789..3262813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL07_RS16080 (RRL07_16080) ybhL 3250948..3251652 (-) 705 WP_000373624.1 Bax inhibitor-1/YccA family protein -
  RRL07_RS16085 (RRL07_16085) moaE 3251789..3252241 (-) 453 WP_000852287.1 molybdopterin synthase catalytic subunit MoaE -
  RRL07_RS16090 (RRL07_16090) moaD 3252243..3252488 (-) 246 WP_000611261.1 molybdopterin synthase sulfur carrier subunit -
  RRL07_RS16095 (RRL07_16095) moaC 3252481..3252966 (-) 486 WP_000080885.1 cyclic pyranopterin monophosphate synthase MoaC -
  RRL07_RS16100 (RRL07_16100) moaB 3252969..3253481 (-) 513 WP_000084639.1 molybdenum cofactor biosynthesis protein B -
  RRL07_RS16105 (RRL07_16105) moaA 3253503..3254492 (-) 990 WP_001295888.1 GTP 3',8-cyclase MoaA -
  RRL07_RS16110 (RRL07_16110) yvcK 3254889..3255797 (+) 909 WP_001295887.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  RRL07_RS16115 (RRL07_16115) uvrB 3255789..3257813 (-) 2025 WP_315671092.1 excinuclease ABC subunit UvrB Machinery gene
  RRL07_RS16120 (RRL07_16120) bioD 3258392..3259069 (-) 678 WP_000030923.1 dethiobiotin synthase -
  RRL07_RS16125 (RRL07_16125) bioC 3259062..3259817 (-) 756 WP_000246772.1 malonyl-ACP O-methyltransferase BioC -
  RRL07_RS16130 (RRL07_16130) bioF 3259804..3260958 (-) 1155 WP_000118852.1 8-amino-7-oxononanoate synthase -
  RRL07_RS16135 (RRL07_16135) bioB 3260955..3261995 (-) 1041 WP_000951213.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 674 a.a.        Molecular weight: 76288.09 Da        Isoelectric Point: 4.8494

>NTDB_id=810642 RRL07_RS16115 WP_315671092.1 3255789..3257813(-) (uvrB) [Escherichia coli strain isolateI]
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF
FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR
FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE
PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE
LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS
MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE
GLMMQHAQNLEFEEAAQIRDQMTKPEYSSGFVLT

Nucleotide


Download         Length: 2025 bp        

>NTDB_id=810642 RRL07_RS16115 WP_315671092.1 3255789..3257813(-) (uvrB) [Escherichia coli strain isolateI]
ATGAGTAAACCGTTCAAACTGAATTCCGCTTTTAAACCTTCTGGCGATCAGCCGGAGGCGATTCGACGTCTCGAAGAGGG
GCTGGAAGATGGCCTGGCGCACCAGACGTTACTTGGCGTGACTGGCTCCGGGAAAACCTTCACCATTGCCAATGTCATTG
CTGACCTTCAGCGCCCAACCATGGTACTTGCGCCCAACAAAACGCTGGCGGCCCAGCTGTATGGCGAAATGAAAGAATTC
TTCCCAGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTACTATCAGCCGGAGGCCTATGTACCGAGTTCCGACAC
CTTTATTGAGAAAGATGCCTCGGTAAACGAACATATCGAACAGATGCGTTTATCCGCCACCAAAGCGATGCTGGAGCGAC
GTGATGTGGTTGTGGTGGCGTCTGTTTCCGCGATTTATGGTCTGGGCGATCCTGATTTATATCTCAAGATGATGCTCCAT
CTCACGGTCGGTATGATTATCGATCAGCGCGCGATCCTGCGCCGACTGGCGGAGCTGCAATATGCCCGTAATGATCAAGC
ATTCCAGCGTGGTACTTTCCGTGTTCGTGGCGAGGTGATTGATATCTTCCCGGCAGAATCGGATGACATTGCACTTCGCG
TGGAGCTGTTTGACGAGGAGGTGGAACGATTGTCGTTATTTGACCCGCTGACCGGGCAGATTGTTTCCACTATTCCACGT
TTTACCATCTACCCGAAAACGCACTACGTCACGCCACGCGAGCGCATCGTCCAGGCGATGGAGGAGATCAAAGAAGAGCT
GGCCGCCAGACGTAAAGTGCTATTGGAAAACAACAAACTGCTGGAAGAGCAGCGGCTGACCCAGCGTACCCAGTTTGATC
TGGAGATGATGAACGAGCTAGGCTACTGTTCGGGGATTGAGAACTACTCGCGCTTCCTCTCCGGTCGTGGACCGGGTGAG
CCACCGCCGACGCTGTTTGATTACCTGCCTGCTGATGGGCTGCTGGTGGTCGATGAATCTCACGTCACCATTCCACAAAT
TGGCGGCATGTATCGCGGTGACCGGGCGCGTAAAGAGACACTGGTGGAGTACGGCTTCCGCTTGCCATCAGCGCTGGATA
ACCGCCCGCTGAAATTTGAAGAGTTCGAAGCATTAGCGCCGCAAACCATCTATGTTTCGGCGACGCCGGGTAATTACGAG
CTGGAAAAATCCGGTGGCGATGTGGTGGATCAGGTTGTGCGTCCAACAGGCTTACTCGACCCGATTATTGAAGTGCGTCC
GGTAGCGACACAGGTGGATGATCTTCTATCGGAGATTCGTCAGCGAGCGGCAATTAACGAACGCGTACTGGTTACAACTC
TGACCAAGCGGATGGCGGAAGATCTCACTGAATATCTCGAAGAACACGGTGAGCGCGTGCGTTATCTTCACTCAGATATC
GATACCGTCGAACGTATGGAGATTATCCGCGACTTGCGTCTGGGTGAGTTCGACGTATTGGTAGGGATCAACTTACTGCG
CGAAGGTCTGGATATGCCGGAGGTTTCGCTGGTGGCGATCCTCGACGCTGACAAAGAAGGCTTCCTGCGTTCCGAACGTT
CGTTGATCCAGACCATTGGTCGTGCGGCACGTAACGTTAACGGTAAAGCGATTCTCTACGGCGATAAGATCACCCCATCA
ATGGCGAAAGCGATTGGCGAAACCGAACGTCGCCGCGAGAAACAGCAGAAGTACAACGAGGAACACGGCATTACGCCGCA
AGGCTTGAACAAGAAAGTGGTCGATATCCTGGCGCTGGGGCAGAACATTGCCAAAACCAAAGCGAAGGGCAGAGGAAAAT
CGCGCCCGATTGTTGAGCCGGATAATGTGCCGATGGATATGTCGCCTAAAGCGTTACAGCAGAAGATCCATGAACTGGAA
GGGTTGATGATGCAACACGCGCAGAATCTGGAGTTCGAAGAAGCGGCGCAAATTCGTGACCAGATGACGAAGCCGGAATA
TTCTTCCGGCTTCGTGTTAACCTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-249)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(436-544)

Type III restriction enzyme, res subunit (ResIII)

(13-92)

UvrB/uvrC motif (UVR)

(634-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.884

98.071

0.558
  uvrB Streptococcus pneumoniae R6

56.732

98.071

0.556
  uvrB Streptococcus pneumoniae D39

56.732

98.071

0.556