Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HT078_RS11225 Genome accession   NZ_AP023071
Coordinates   2139151..2139570 (-) Length   139 a.a.
NCBI ID   WP_172760461.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15748     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2134151..2144570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT078_RS11205 (TUM15748C_21600) msrAB 2134567..2136135 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  HT078_RS11210 (TUM15748C_21610) pilA 2136281..2137534 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  HT078_RS11215 - 2137670..2137828 (+) 159 WP_172762215.1 hypothetical protein -
  HT078_RS11220 (TUM15748C_21620) - 2137802..2138563 (-) 762 Protein_2180 opacity family porin -
  HT078_RS11225 (TUM15748C_21630) pilE 2139151..2139570 (-) 420 WP_172760461.1 pilin Machinery gene
  HT078_RS11230 (TUM15748C_21640) lpxC 2139676..2140599 (-) 924 WP_172760462.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  HT078_RS12575 (TUM15748C_21650) - 2141101..2141817 (-) 717 WP_366557403.1 pilin -
  HT078_RS11250 (TUM15748C_21660) pilE 2141741..2142058 (-) 318 WP_003697861.1 pilin Machinery gene
  HT078_RS11255 - 2142431..2142562 (-) 132 WP_010356054.1 hypothetical protein -
  HT078_RS11260 (TUM15748C_21670) - 2142647..2143336 (-) 690 WP_172760388.1 M48 family metallopeptidase -
  HT078_RS11265 (TUM15748C_21680) - 2143333..2144076 (-) 744 WP_172760387.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15056.83 Da        Isoelectric Point: 9.7771

>NTDB_id=81054 HT078_RS11225 WP_172760461.1 2139151..2139570(-) (pilE) [Neisseria gonorrhoeae strain TUM15748]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPKDNTSAGVASPASNIKGKYVQKVEVNNGVVTAQMKPSGVNNEI
KGKRLSLWGRRENGSVKWFCGQPVTRTAGTDDVAKAGNDNEKINTKHLPSTCRDKSTAT

Nucleotide


Download         Length: 420 bp        

>NTDB_id=81054 HT078_RS11225 WP_172760461.1 2139151..2139570(-) (pilE) [Neisseria gonorrhoeae strain TUM15748]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCCCCGCCTCCAACATCAAAG
GCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAATGAAATC
AAAGGCAAAAGACTATCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAC
CGCCGGCACCGACGACGTCGCCAAAGCCGGCAACGACAACGAAAAAATCAACACCAAGCACCTGCCGTCAACCTGCCGCG
ATAAATCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.714

100

0.712
  pilE Neisseria gonorrhoeae MS11

71.014

99.281

0.705

Multiple sequence alignment