Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HT078_RS11250 Genome accession   NZ_AP023071
Coordinates   2141741..2142058 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15748     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2136741..2147058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT078_RS11215 - 2137670..2137828 (+) 159 WP_172762215.1 hypothetical protein -
  HT078_RS11220 (TUM15748C_21620) - 2137802..2138563 (-) 762 Protein_2180 opacity family porin -
  HT078_RS11225 (TUM15748C_21630) pilE 2139151..2139570 (-) 420 WP_172760461.1 pilin Machinery gene
  HT078_RS11230 (TUM15748C_21640) lpxC 2139676..2140599 (-) 924 WP_172760462.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  HT078_RS12575 (TUM15748C_21650) - 2141101..2141817 (-) 717 WP_366557403.1 pilin -
  HT078_RS11250 (TUM15748C_21660) pilE 2141741..2142058 (-) 318 WP_003697861.1 pilin Machinery gene
  HT078_RS11255 - 2142431..2142562 (-) 132 WP_010356054.1 hypothetical protein -
  HT078_RS11260 (TUM15748C_21670) - 2142647..2143336 (-) 690 WP_172760388.1 M48 family metallopeptidase -
  HT078_RS11265 (TUM15748C_21680) - 2143333..2144076 (-) 744 WP_172760387.1 lysophospholipid acyltransferase family protein -
  HT078_RS11270 (TUM15748C_21690) gmhB 2144106..2144669 (-) 564 WP_050155465.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  HT078_RS11275 (TUM15748C_21700) - 2144812..2146464 (+) 1653 WP_172761313.1 LTA synthase family protein -
  HT078_RS12430 (TUM15748C_21710) - 2146531..2147046 (-) 516 WP_249933656.1 glycosyltransferase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=81055 HT078_RS11250 WP_003697861.1 2141741..2142058(-) (pilE) [Neisseria gonorrhoeae strain TUM15748]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=81055 HT078_RS11250 WP_003697861.1 2141741..2142058(-) (pilE) [Neisseria gonorrhoeae strain TUM15748]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment