Detailed information NTG0081056

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OPA56_RS24200
• Genome accession: NZ_AP026788
• Coordinates: 4939350..4940375 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain IPCEC42
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4934350..4945375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPA56_RS24180 (IPCEC42_46480)	metJ	4935535..4935852 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
OPA56_RS24185 (IPCEC42_46490)	yiiX	4935912..4936520 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OPA56_RS24190 (IPCEC42_46500)	rpmE	4936581..4936793 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
OPA56_RS24195 (IPCEC42_46510)	priA	4936996..4939194 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OPA56_RS24200 (IPCEC42_46520)	cytR	4939350..4940375 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OPA56_RS24205 (IPCEC42_46530)	ftsN	4940467..4941426 (+)	960	WP_000068834.1	cell division protein FtsN	-
OPA56_RS24210 (IPCEC42_46540)	hslV	4941519..4942049 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OPA56_RS24215 (IPCEC42_46550)	hslU	4942059..4943390 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OPA56_RS24220 (IPCEC42_46560)	menA	4943457..4944383 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OPA56_RS24225 (IPCEC42_46570)	rraA	4944476..4944961 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OPA56_RS24230 (IPCEC42_46580)	zapB	4945046..4945291 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=81056 OPA56_RS24200 WP_000644908.1 4939350..4940375(+) (cytR) [Escherichia coli strain IPCEC42]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=81056 OPA56_RS24200 WP_000644908.1 4939350..4940375(+) (cytR) [Escherichia coli strain IPCEC42]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625