Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ROT04_RS28980 Genome accession   NZ_CP135174
Coordinates   6215015..6217090 (+) Length   691 a.a.
NCBI ID   WP_058354783.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6210015..6222090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS28950 (ROT04_28950) - 6210437..6210817 (+) 381 WP_003096609.1 RidA family protein -
  ROT04_RS28955 (ROT04_28955) - 6210872..6211603 (+) 732 WP_003096611.1 hypothetical protein -
  ROT04_RS28960 (ROT04_28960) - 6211610..6212230 (-) 621 WP_003096613.1 LysE family translocator -
  ROT04_RS28965 (ROT04_28965) - 6212297..6213097 (-) 801 WP_058354782.1 AraC family transcriptional regulator -
  ROT04_RS28970 (ROT04_28970) - 6213097..6213948 (-) 852 WP_003096618.1 SDR family oxidoreductase -
  ROT04_RS28975 (ROT04_28975) oxyR 6214086..6215018 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  ROT04_RS28980 (ROT04_28980) recG 6215015..6217090 (+) 2076 WP_058354783.1 ATP-dependent DNA helicase RecG Machinery gene
  ROT04_RS28985 (ROT04_28985) - 6217180..6218589 (+) 1410 WP_003136268.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  ROT04_RS28990 (ROT04_28990) - 6218661..6219053 (-) 393 WP_003096629.1 hypothetical protein -
  ROT04_RS28995 (ROT04_28995) - 6219189..6219461 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  ROT04_RS29000 (ROT04_29000) alkT 6219663..6220817 (-) 1155 WP_003114369.1 rubredoxin-NAD(+) reductase AlkT -
  ROT04_RS29005 (ROT04_29005) - 6220869..6221036 (-) 168 WP_003098329.1 rubredoxin -
  ROT04_RS29010 (ROT04_29010) - 6221220..6221387 (-) 168 WP_003098330.1 rubredoxin -
  ROT04_RS29015 (ROT04_29015) - 6221521..6221922 (-) 402 WP_003096637.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76120.84 Da        Isoelectric Point: 7.4218

>NTDB_id=810409 ROT04_RS28980 WP_058354783.1 6215015..6217090(+) (recG) [Pseudomonas aeruginosa strain PARM_L1]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDALPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=810409 ROT04_RS28980 WP_058354783.1 6215015..6217090(+) (recG) [Pseudomonas aeruginosa strain PARM_L1]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTGAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCAC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGCCTCAAGCG
CGGTACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCATCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTATCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAAGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGCGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAGA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.224

97.106

0.488
  recG/mmsA Streptococcus pneumoniae R6

40.868

96.671

0.395
  recG/mmsA Streptococcus pneumoniae R36A

40.868

96.671

0.395
  recG Bacillus subtilis subsp. subtilis str. 168

40.208

97.54

0.392