Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RO838_RS09770 Genome accession   NZ_CP135134
Coordinates   2120550..2122559 (-) Length   669 a.a.
NCBI ID   WP_057682722.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2115550..2127559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO838_RS09720 (RO838_09720) - 2115634..2116065 (+) 432 WP_316664987.1 hypothetical protein -
  RO838_RS09725 (RO838_09725) - 2116580..2116771 (+) 192 WP_057682724.1 S24 family peptidase -
  RO838_RS09730 (RO838_09730) - 2116814..2117311 (+) 498 WP_057682723.1 hypothetical protein -
  RO838_RS09735 (RO838_09735) - 2117709..2118056 (-) 348 WP_316664991.1 RNA-guided endonuclease TnpB family protein -
  RO838_RS09740 (RO838_09740) - 2118046..2118390 (-) 345 WP_235443642.1 hypothetical protein -
  RO838_RS09745 (RO838_09745) - 2118556..2118696 (-) 141 WP_241558657.1 helix-turn-helix domain-containing protein -
  RO838_RS09750 (RO838_09750) - 2118690..2118950 (-) 261 Protein_1905 recombinase family protein -
  RO838_RS09755 (RO838_09755) - 2119094..2119417 (+) 324 WP_057682810.1 DNA-binding protein -
  RO838_RS09760 (RO838_09760) - 2119462..2120364 (+) 903 WP_235443640.1 site-specific integrase -
  RO838_RS09770 (RO838_09770) uvrB 2120550..2122559 (-) 2010 WP_057682722.1 excinuclease ABC subunit UvrB Machinery gene
  RO838_RS09775 (RO838_09775) - 2122714..2123301 (+) 588 WP_011098232.1 Tfp pilus assembly protein FimT/FimU -
  RO838_RS09780 (RO838_09780) - 2123763..2124269 (-) 507 WP_057682721.1 hypothetical protein -
  RO838_RS09785 (RO838_09785) dapA 2124289..2125197 (-) 909 WP_057682808.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RO838_RS09790 (RO838_09790) - 2125350..2125925 (+) 576 WP_011098233.1 glycine cleavage system protein R -
  RO838_RS09795 (RO838_09795) - 2125972..2126451 (+) 480 WP_057682720.1 peroxiredoxin -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 75452.06 Da        Isoelectric Point: 5.1893

>NTDB_id=810201 RO838_RS09770 WP_057682722.1 2120550..2122559(-) (uvrB) [Xylella fastidiosa strain CFBP8478]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEIIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQQ
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=810201 RO838_RS09770 WP_057682722.1 2120550..2122559(-) (uvrB) [Xylella fastidiosa strain CFBP8478]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCTGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTTACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACCGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACACGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGTCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTCGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTACTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTTCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCACGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGACCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTTTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCGGGTGAAATCATAGAGTTGCTGGTGCGTCCGACCGGCTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACGCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAACCTTCTACG
TGAGGGATTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTACGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAAGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCGCAGATGAAAGTGCTGGAGCAACAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(16-92)

UvrB interaction domain (UvrB_inter)

(160-249)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)

UvrB/uvrC motif (UVR)

(635-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.03

98.057

0.54
  uvrB Streptococcus pneumoniae R6

54.878

98.057

0.538
  uvrB Streptococcus pneumoniae D39

54.878

98.057

0.538