NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	P8T86_RS17150	Genome accession	NZ_CP121102
Coordinates	3187285..3187752 (-)	Length	155 a.a.
NCBI ID	WP_036655661.1	Uniprot ID	A0AAP5JTP9
Organism	Paenibacillus larvae strain PL006
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3182285..3192752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P8T86_RS17115 (P8T86_17040)	-	3183099..3184016 (-)	918	WP_036657285.1	DUF2232 domain-containing protein	-
P8T86_RS17120 (P8T86_17045)	-	3184421..3184756 (-)	336	WP_036655655.1	hypothetical protein	-
P8T86_RS17125 (P8T86_17050)	-	3184994..3185326 (+)	333	WP_023482396.1	PadR family transcriptional regulator	-
P8T86_RS17130 (P8T86_17055)	-	3185408..3185773 (+)	366	WP_023482397.1	hypothetical protein	-
P8T86_RS17135 (P8T86_17060)	-	3185780..3186394 (+)	615	WP_036655658.1	type 1 glutamine amidotransferase domain-containing protein	-
P8T86_RS17140 (P8T86_17065)	-	3186409..3186679 (-)	271	Protein_3424	NCS2 family permease	-
P8T86_RS17145 (P8T86_17070)	rpsR	3186959..3187261 (-)	303	WP_023482399.1	30S ribosomal protein S18	-
P8T86_RS17150 (P8T86_17075)	ssbA	3187285..3187752 (-)	468	WP_036655661.1	single-stranded DNA-binding protein	Machinery gene
P8T86_RS17155 (P8T86_17080)	rpsF	3187796..3188083 (-)	288	WP_023482401.1	30S ribosomal protein S6	-
P8T86_RS17160 (P8T86_17085)	-	3188285..3188470 (+)	186	WP_023482402.1	YjzC family protein	-
P8T86_RS17165 (P8T86_17090)	-	3188476..3188739 (+)	264	WP_036655664.1	hypothetical protein	-
P8T86_RS17175 (P8T86_17100)	-	3189042..3189252 (-)	211	Protein_3430	DUF951 domain-containing protein	-
P8T86_RS17180 (P8T86_17105)	-	3189254..3190144 (-)	891	WP_023482404.1	mechanosensitive ion channel family protein	-
P8T86_RS17185 (P8T86_17110)	-	3190184..3190435 (-)	252	WP_024095527.1	DUF3343 domain-containing protein	-
P8T86_RS17190 (P8T86_17115)	yyaC	3190533..3191150 (+)	618	WP_024095528.1	spore protease YyaC	-
P8T86_RS17195 (P8T86_17120)	-	3191122..3191604 (-)	483	WP_158225702.1	DUF4446 family protein	-

Sequence

Protein

Download Length: 155 a.a. Molecular weight: 17554.35 Da Isoelectric Point: 4.8103

                                >NTDB_id=810144 P8T86_RS17150 WP_036655661.1 3187285..3187752(-) (ssbA) [Paenibacillus larvae strain PL006]

MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPYMNQQTRERETDFINIVTWRQLAETCANYLRKGRLTAVEGRIQV

RNYENNEGRKVYVTEIVADNVRFLESNNAGNRNNDEGSYSNAGYGGGSRSGGSQQQDPFLDDSKPIDISDDDLPF

Nucleotide

Download Length: 468 bp

                                >NTDB_id=810144 P8T86_RS17150 WP_036655661.1 3187285..3187752(-) (ssbA) [Paenibacillus larvae strain PL006]

TTGCTTAACCGTGTGATTCTGATCGGCAGGCTGACAAGAGACCCGGAATTGCGATACACTCCATCCGGTGTGGCTGTTAC

CCAATTTACCCTGGCGGTAGACCGTCCGTATATGAACCAGCAAACGCGTGAGCGGGAGACAGATTTCATTAATATCGTGA

CGTGGAGACAGCTGGCTGAGACTTGTGCCAACTACCTGCGGAAAGGCCGTTTGACGGCGGTAGAAGGAAGAATTCAAGTG

CGTAATTATGAGAACAATGAGGGCCGCAAAGTATACGTGACCGAAATTGTGGCTGATAATGTGCGGTTCCTTGAATCGAA

TAATGCCGGAAACCGCAATAACGACGAAGGGTCTTATTCTAATGCAGGATACGGTGGCGGAAGCCGAAGCGGTGGATCAC

AACAGCAAGATCCGTTCCTCGATGATAGCAAGCCGATTGATATTTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	52.601	100	0.587
ssb	Latilactobacillus sakei subsp. sakei 23K	46.199	100	0.51
ssb	Neisseria gonorrhoeae MS11	36.158	100	0.413
ssb	Neisseria meningitidis MC58	36.158	100	0.413
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.286	67.742	0.368
ssb	Glaesserella parasuis strain SC1401	31.638	100	0.361

Detailed information NTG0810144