Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RO839_RS09755 Genome accession   NZ_CP135132
Coordinates   2120480..2122489 (-) Length   669 a.a.
NCBI ID   WP_057682722.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CO33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2115480..2127489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO839_RS09705 (RO839_09705) - 2115564..2115995 (+) 432 WP_316664987.1 hypothetical protein -
  RO839_RS09710 (RO839_09710) - 2116510..2116701 (+) 192 WP_057682724.1 S24 family peptidase -
  RO839_RS09715 (RO839_09715) - 2116744..2117241 (+) 498 WP_057682723.1 hypothetical protein -
  RO839_RS09720 (RO839_09720) - 2117639..2117986 (-) 348 WP_316664991.1 RNA-guided endonuclease TnpB family protein -
  RO839_RS09725 (RO839_09725) - 2117976..2118320 (-) 345 WP_235443642.1 hypothetical protein -
  RO839_RS09730 (RO839_09730) - 2118486..2118626 (-) 141 WP_241558657.1 helix-turn-helix domain-containing protein -
  RO839_RS09735 (RO839_09735) - 2118620..2118880 (-) 261 Protein_1902 recombinase family protein -
  RO839_RS09740 (RO839_09740) - 2119024..2119347 (+) 324 WP_057682810.1 DNA-binding protein -
  RO839_RS09745 (RO839_09745) - 2119392..2120294 (+) 903 WP_235443640.1 site-specific integrase -
  RO839_RS09755 (RO839_09755) uvrB 2120480..2122489 (-) 2010 WP_057682722.1 excinuclease ABC subunit UvrB Machinery gene
  RO839_RS09760 (RO839_09760) - 2122644..2123231 (+) 588 WP_011098232.1 Tfp pilus assembly protein FimT/FimU -
  RO839_RS09765 (RO839_09765) - 2123693..2124199 (-) 507 WP_057682721.1 hypothetical protein -
  RO839_RS09770 (RO839_09770) dapA 2124219..2125127 (-) 909 WP_057682808.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RO839_RS09775 (RO839_09775) - 2125280..2125855 (+) 576 WP_011098233.1 glycine cleavage system protein R -
  RO839_RS09780 (RO839_09780) - 2125902..2126381 (+) 480 WP_057682720.1 peroxiredoxin -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 75452.06 Da        Isoelectric Point: 5.1893

>NTDB_id=810140 RO839_RS09755 WP_057682722.1 2120480..2122489(-) (uvrB) [Xylella fastidiosa strain CO33]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEIIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQQ
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=810140 RO839_RS09755 WP_057682722.1 2120480..2122489(-) (uvrB) [Xylella fastidiosa strain CO33]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCTGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTTACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACCGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACACGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGTCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTCGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTACTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTTCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCACGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGACCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTTTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCGGGTGAAATCATAGAGTTGCTGGTGCGTCCGACCGGCTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACGCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAACCTTCTACG
TGAGGGATTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTACGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAAGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCGCAGATGAAAGTGCTGGAGCAACAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(16-92)

UvrB interaction domain (UvrB_inter)

(160-249)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)

UvrB/uvrC motif (UVR)

(635-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.03

98.057

0.54
  uvrB Streptococcus pneumoniae R6

54.878

98.057

0.538
  uvrB Streptococcus pneumoniae D39

54.878

98.057

0.538