Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QN339_RS07245 Genome accession   NZ_CP135104
Coordinates   1436405..1438396 (-) Length   663 a.a.
NCBI ID   WP_410534263.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MA15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1431405..1443396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN339_RS07215 (QN339_07195) - 1432007..1432686 (+) 680 WP_162493141.1 IS6-like element IS1216 family transposase -
  QN339_RS07220 (QN339_07200) asp2 1432743..1433444 (+) 702 Protein_1378 accessory Sec system protein Asp2 -
  QN339_RS07225 (QN339_07205) asp3 1433441..1434433 (+) 993 WP_000104398.1 accessory Sec system protein Asp3 -
  QN339_RS07230 (QN339_07210) - 1434420..1435031 (+) 612 Protein_1380 accessory Sec system translocase SecA2 -
  QN339_RS07235 (QN339_07215) - 1435086..1435766 (-) 681 WP_001015311.1 IS6-like element IS1216 family transposase -
  QN339_RS07240 (QN339_07220) - 1435840..1436307 (+) 468 Protein_1382 transcriptional regulator -
  QN339_RS07245 (QN339_07225) uvrB 1436405..1438396 (-) 1992 WP_410534263.1 excinuclease ABC subunit UvrB Machinery gene
  QN339_RS07250 (QN339_07230) - 1438457..1439377 (-) 921 WP_001042316.1 CPBP family intramembrane glutamic endopeptidase -
  QN339_RS07255 (QN339_07235) - 1439560..1441743 (+) 2184 WP_000681006.1 ABC transporter substrate-binding protein/permease -
  QN339_RS07260 (QN339_07240) - 1441743..1442483 (+) 741 WP_000818887.1 amino acid ABC transporter ATP-binding protein -
  QN339_RS07265 (QN339_07245) - 1442632..1442982 (+) 351 WP_000656279.1 hypothetical protein -
  QN339_RS07270 (QN339_07250) - 1443067..1443234 (-) 168 WP_000502595.1 hypothetical protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 75943.97 Da        Isoelectric Point: 4.7322

>NTDB_id=810062 QN339_RS07245 WP_410534263.1 1436405..1438396(-) (uvrB) [Streptococcus agalactiae strain MA15]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGQEISRDQLLNNLVDIQFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVL
GEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVEIFEKEGKLIEAQRIRQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMGQTDTVVEQIIRPTGLLDPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSNGHVIMYADK
ITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAITKSNDSDKPEKVVDYSSLSKKERQAEIKALQKQMQEA
AELLDFELAAQIRDVILKLKAID

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=810062 QN339_RS07245 WP_410534263.1 1436405..1438396(-) (uvrB) [Streptococcus agalactiae strain MA15]
ATGATAGATAGAAAAGATACTAACCGATTTAAATTAGTTTCCAAATATAGCCCTTCGGGAGATCAACCTCAAGCTATTGA
AACGTTGGTTGACAATATTGAAGGAGGAGAAAAAGCTCAGATTTTAAAAGGTGCTACTGGTACTGGTAAAACCTACACAA
TGAGCCAAGTTATCGCCCAAGTTAACAAGCCAACCTTGGTGATTGCACATAATAAAACCTTAGCAGGTCAACTTTATGGA
GAGTTTAAAGAATTTTTTCCTGACAATGCCGTAGAGTACTTTGTTTCATATTATGATTATTATCAACCAGAAGCTTATGT
GCCTTCTTCGGATACTTATATTGAAAAAGATAGTTCAGTCAATGACGAAATTGACAAATTACGTCACTCAGCGACTTCTT
CGTTATTAGAAAGAAATGACGTTATTGTTGTAGCATCTGTTTCTTGTATTTACGGTTTAGGTTCTCCTAAAGAGTATGCA
GACAGTGTTGTTAGCCTTAGGCCAGGTCAAGAAATTTCACGTGATCAGTTATTGAACAATCTCGTTGATATTCAATTTGA
GCGTAACGATATTGATTTTCAACGTGGAAAATTTCGCGTTCGTGGCGATGTTGTAGAAGTTTTTCCTGCGAGTCGTGATG
AGCATGCCTTTCGAATTGAATTTTTTGGTGATGAAATTGATCGTATAAGAGAAATAGAATCGTTAACAGGGCGTGTGCTA
GGAGAAGTGGAACATTTAGCTATTTTCCCAGCAACACACTTTATGACAAATGATGAACATATGGAAGAAGCTATTTCAAA
AATACAAGCTGAAATGGAAAATCAAGTAGAAATTTTTGAAAAAGAAGGGAAATTGATTGAAGCGCAACGTATTCGACAAA
GGACAGAATATGATATTGAAATGCTTCGTGAAATGGGATATACAAATGGTGTTGAGAACTACTCACGTCACATGGATGGT
AGAAGTGAAGGTGAGCCACCTTTTACTTTGTTAGATTTCTTCCCAGAAGATTTTTTGATTATGATTGATGAGAGTCACAT
GACAATGGGGCAAATCAAAGGGATGTATAATGGAGACCGTTCGCGTAAAGAAATGTTGGTTAATTACGGTTTTCGTTTAC
CATCTGCCTTAGATAACCGTCCACTTCGTCGTGAAGAATTCGAAAGCCATGTCCATCAAATTGTCTATGTATCTGCAACG
CCAGGAGACTATGAAATGGGGCAAACAGATACGGTTGTTGAGCAAATTATCCGGCCAACAGGACTTCTTGATCCAGAAGT
TGAAGTTAGACCAAGTATGGGGCAGATGGATGACTTGCTTGGTGAAATCAATTTGAGGACTGAAAAAGGTGAGCGTACCT
TTATTACAACATTGACAAAGCGCATGGCAGAAGACTTAACAGATTATCTCAAAGAAATGGGAGTTAAAGTTAAGTATATG
CACAGCGATATTAAAACCTTAGAACGTACAGAGATTATTCGTGATTTACGACTTGGTGTGTTTGATGTTTTAATTGGTAT
TAATCTCTTACGTGAAGGAATAGATGTTCCTGAGGTTTCCCTTGTTGCAATCTTAGATGCTGATAAGGAAGGTTTCCTTC
GTAATGAGCGTGGTCTTATCCAAACAATCGGACGTGCAGCACGTAACAGTAATGGTCATGTTATTATGTATGCTGATAAA
ATAACAGATTCTATGCAAAGAGCTATGGATGAAACCGCTCGCCGTCGTCGTTTACAAATGGATTATAATGAAAAGCATGG
AATTGTGCCACAAACAATTAAAAAAGAAATCCGTGATTTAATTGCTATTACTAAAAGTAATGACAGCGATAAACCTGAAA
AAGTTGTCGATTACAGTAGTTTATCTAAGAAAGAAAGGCAAGCTGAAATTAAAGCTCTTCAAAAGCAAATGCAAGAAGCA
GCTGAATTATTGGACTTTGAGCTAGCTGCACAAATCCGAGATGTTATCTTAAAACTAAAAGCAATCGATTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

Type III restriction enzyme, res subunit (ResIII)

(20-143)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(628-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

87.029

100

0.87
  uvrB Streptococcus pneumoniae D39

87.029

100

0.87
  uvrB Streptococcus pneumoniae TIGR4

86.878

100

0.869