Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QN329_RS05850 Genome accession   NZ_CP135103
Coordinates   1093455..1095446 (+) Length   663 a.a.
NCBI ID   WP_410531305.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088455..1100446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS05825 (QN329_05850) - 1088617..1088775 (+) 159 WP_000502594.1 hypothetical protein -
  QN329_RS05830 (QN329_05855) - 1088868..1089218 (-) 351 WP_000656279.1 hypothetical protein -
  QN329_RS05835 (QN329_05860) - 1089368..1090108 (-) 741 WP_000818887.1 amino acid ABC transporter ATP-binding protein -
  QN329_RS05840 (QN329_05865) - 1090108..1092291 (-) 2184 WP_000681005.1 ABC transporter substrate-binding protein/permease -
  QN329_RS05845 (QN329_05870) - 1092474..1093394 (+) 921 WP_001042311.1 CPBP family intramembrane glutamic endopeptidase -
  QN329_RS05850 (QN329_05875) uvrB 1093455..1095446 (+) 1992 WP_410531305.1 excinuclease ABC subunit UvrB Machinery gene
  QN329_RS05855 (QN329_05880) - 1095544..1095831 (-) 288 Protein_1084 transcriptional regulator -
  QN329_RS05860 (QN329_05885) - 1095869..1096674 (+) 806 WP_410531306.1 IS5 family transposase -
  QN329_RS05865 (QN329_05890) - 1096690..1097898 (-) 1209 Protein_1086 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 75946.99 Da        Isoelectric Point: 4.6858

>NTDB_id=809944 QN329_RS05850 WP_410531305.1 1093455..1095446(+) (uvrB) [Streptococcus agalactiae strain HU36/21]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGQEISRDQLLNNLVDIQFERNDIDFQCGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIEALTGRVL
GEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSNGHVIMYADK
ITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAITKSNDSDKPEKVVDYSSLSKKERQAEIKALQKQMQEA
AELLDFELAAQIRDVILKLKAID

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=809944 QN329_RS05850 WP_410531305.1 1093455..1095446(+) (uvrB) [Streptococcus agalactiae strain HU36/21]
ATGATAGATAGAAAAGATACTAACCGATTTAAATTAGTTTCCAAATATAGTCCTTCGGGAGATCAACCTCAAGCTATTGA
AACGTTGGTTGACAATATTGAAGGAGGAGAAAAAGCTCAGATTTTAAAAGGTGCTACTGGTACTGGTAAAACCTACACAA
TGAGCCAAGTTATCGCCCAAGTTAACAAGCCAACCTTGGTGATTGCACATAATAAAACCTTAGCAGGTCAACTTTATGGA
GAGTTTAAAGAATTTTTTCCTGACAATGCCGTAGAGTACTTTGTTTCATATTATGATTATTATCAACCAGAAGCTTATGT
GCCTTCTTCGGATACTTATATTGAAAAAGATAGCTCAGTCAATGACGAAATTGACAAATTACGTCACTCAGCGACTTCTT
CGTTATTAGAAAGAAATGACGTTATTGTTGTAGCATCTGTTTCTTGTATTTACGGTTTAGGTTCTCCTAAAGAGTATGCA
GACAGTGTTGTTAGCCTTAGGCCAGGTCAAGAAATTTCACGTGATCAGTTATTGAACAATCTCGTTGATATTCAATTTGA
GCGTAACGATATTGATTTTCAATGTGGAAAATTTCGCGTTCGTGGCGATGTTGTAGAAGTTTTTCCTGCGAGTCGTGATG
AGCATGCCTTTCGAATTGAATTTTTTGGTGATGAAATTGATCGTATAAGAGAAATAGAAGCGTTAACAGGGCGTGTGCTA
GGAGAAGTGGAACATTTAGCTATTTTCCCAGCAACACACTTTATGACAAATGATGAACATATGGAAGAAGCTATTTCAAA
AATACAAGCTGAAATGGAAAATCAAGTAGAACTCTTTGAAAAAGAAGGGAAATTGATTGAAGCGCAACGTATTCGACAAA
GGACAGAATATGATATTGAAATGCTTCGTGAAATGGGATATACAAATGGTGTTGAGAACTACTCACGTCACATGGATGGC
AGAAGTGAAGGTGAGCCGCCTTTTACTTTGTTAGATTTCTTCCCAGAAGATTTTTTGATTATGATTGATGAGAGTCACAT
GACAATGGGGCAAATCAAAGGGATGTATAATGGAGACCGTTCGCGTAAAGAAATGTTGGTTAATTACGGTTTTCGTTTAC
CATCTGCCTTAGATAACCGTCCACTTCGTCGTGAAGAATTCGAAAGCCATGTCCATCAAATTGTCTATGTATCTGCAACG
CCAGGAGACTATGAAATGGAGCAAACAGATACGGTTGTTGAGCAAATTATCCGGCCAACAGGACTTCTTGATCCAGAAGT
TGAAGTTAGACCAAGTATGGGGCAGATGGATGACTTGCTTGGTGAAATCAATTTGAGGACTGAAAAAGGTGAGCGTACCT
TTATTACAACATTGACAAAGCGTATGGCAGAAGACTTAACAGATTATCTCAAAGAAATGGGAGTTAAAGTTAAGTATATG
CACAGCGATATTAAAACCCTAGAACGTACAGAGATTATTCGTGATCTACGACTTGGTGTGTTTGATGTTTTAATTGGTAT
TAATCTCTTACGTGAAGGAATAGATGTTCCTGAGGTTTCCCTTGTTGCAATCTTAGATGCTGATAAGGAAGGTTTCCTTC
GTAATGAGCGTGGTCTTATCCAAACAATAGGACGTGCAGCACGTAACAGTAATGGTCATGTTATTATGTATGCTGATAAA
ATAACAGATTCTATGCAAAGAGCTATGGATGAGACCGCTCGCCGTCGTCGTTTACAAATGGATTATAATGAAAAGCATGG
AATTGTGCCACAAACAATTAAAAAAGAAATCCGTGATTTAATTGCCATTACTAAAAGTAATGACAGCGATAAACCTGAAA
AAGTTGTCGATTACAGTAGTTTATCTAAAAAAGAAAGGCAAGCTGAAATTAAAGCTCTTCAAAAGCAAATGCAAGAAGCA
GCTGAATTATTGGACTTTGAGCTAGCTGCACAAATCCGAGATGTTATCTTAAAACTAAAAGCAATCGATTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

Type III restriction enzyme, res subunit (ResIII)

(20-142)

UvrB/uvrC motif (UVR)

(628-661)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

87.179

100

0.872
  uvrB Streptococcus pneumoniae D39

87.179

100

0.872
  uvrB Streptococcus pneumoniae TIGR4

87.029

100

0.87