Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   QN329_RS04820 Genome accession   NZ_CP135103
Coordinates   900163..902178 (+) Length   671 a.a.
NCBI ID   WP_000926639.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 895163..907178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS04800 (QN329_04825) - 895964..896971 (+) 1008 WP_000505727.1 3-deoxy-7-phosphoheptulonate synthase -
  QN329_RS04805 (QN329_04830) acpS 896996..897355 (+) 360 WP_000635015.1 holo-ACP synthase -
  QN329_RS04810 (QN329_04835) alr 897352..898452 (+) 1101 WP_000625946.1 alanine racemase -
  QN329_RS04815 (QN329_04840) - 898545..900083 (+) 1539 WP_371105725.1 CHAP domain-containing protein -
  QN329_RS04820 (QN329_04845) recG/mmsA 900163..902178 (+) 2016 WP_000926639.1 ATP-dependent DNA helicase RecG Machinery gene
  QN329_RS04825 (QN329_04850) - 902469..903383 (+) 915 WP_000939993.1 aldo/keto reductase family oxidoreductase -
  QN329_RS04830 (QN329_04855) aroE 903481..904359 (+) 879 WP_001086866.1 shikimate dehydrogenase -
  QN329_RS04835 (QN329_04860) - 904394..905356 (-) 963 WP_000723063.1 asparaginase -
  QN329_RS04840 (QN329_04865) - 905425..906807 (+) 1383 WP_000974894.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75203.75 Da        Isoelectric Point: 6.8380

>NTDB_id=809938 QN329_RS04820 WP_000926639.1 900163..902178(+) (recG/mmsA) [Streptococcus agalactiae strain HU36/21]
MLLQSPISNLKGFGPKSAEKFQKLDIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEKAVITGLVVTPANVQYYGFKRNRLS
FKLRQGEAVLNVSFFNQPYLADKIELGQEVAVFGKWDATKSAITGMKVLAQVEDDMQPVYRVSQGISQSTLIKAIKSAFE
INAHLELKENLPATLLGKYRLMGRSQACLAMHFPKDITEYKQALRRIKFEELFYFQMNLQVLKAENKSETNGLPILYSKY
AMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVGSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYIS
LQELFPDLSIAILTSGMKATVKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQIGAVLEWVKGELQKDAQVYVISPLIEESEALDLKN
AVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGYKQSYAVLVANPKTDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR
VASDIVKDNNWKENTEWALILDNLRQHSDFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=809938 QN329_RS04820 WP_000926639.1 900163..902178(+) (recG/mmsA) [Streptococcus agalactiae strain HU36/21]
ATGCTATTACAATCACCAATTTCTAATCTTAAGGGATTTGGACCAAAATCAGCAGAAAAATTTCAGAAATTAGATATTTA
TACAGTAGAAGATTTACTTCTTTATTATCCGTTTCGCTATGAAGATTTTAAATCAAAATCTGTTTTTGATTTAGTGGATG
GTGAAAAAGCAGTCATTACAGGCTTAGTCGTTACTCCAGCTAATGTACAATATTATGGTTTTAAACGTAACCGTTTAAGT
TTCAAATTGCGTCAAGGGGAAGCTGTCTTAAATGTTAGTTTTTTTAATCAACCCTATTTAGCTGATAAAATAGAACTTGG
TCAAGAGGTAGCTGTCTTTGGTAAATGGGATGCAACTAAATCAGCTATTACTGGGATGAAGGTTTTAGCTCAAGTTGAAG
ATGACATGCAACCTGTTTATCGCGTATCTCAGGGAATTTCACAGTCTACTTTGATTAAAGCTATTAAGTCAGCTTTTGAA
ATCAATGCGCATTTGGAATTGAAGGAAAATTTACCAGCTACTTTATTGGGAAAATACCGATTGATGGGTCGTAGTCAGGC
TTGTTTAGCCATGCATTTCCCAAAAGATATCACAGAGTATAAGCAAGCGCTCCGTCGGATTAAATTTGAAGAATTATTTT
ACTTTCAAATGAACCTTCAAGTTTTGAAAGCCGAAAATAAATCTGAAACAAATGGTTTGCCTATTCTTTATAGTAAATAT
GCTATGGAGACAAAGATTTCCTCTTTACCTTTTATTCTAACGAATGCTCAAAAGCGCTCTTTAGATGAAATATTATCTGA
TATGTCATCGGGAGCTCATATGAATCGTTTATTGCAAGGAGATGTAGGATCAGGAAAGACAGTCATTGCTGGTCTATCAA
TGTATGCAGCTTATACAGCAGGTTTTCAATCGGCTTTGATGGTCCCAACGGAAATCCTAGCTGAACAACACTACATTAGT
CTGCAAGAATTATTTCCAGATTTATCAATTGCTATATTAACTTCGGGTATGAAAGCAACTGTCAAGCGTACGGTTTTAGC
AGCTATTGCAAATGGCTCGGTTGATATGATTGTAGGAACTCATGCTCTTATCCAGGACTCGGTACAGTACCATAAACTGG
GGCTTGTAATTACAGACGAGCAACATCGTTTTGGTGTTAAACAGCGTAGAATTTTCCGTGAAAAGGGAGAAAATCCTGAT
GTTTTAATGATGACAGCCACCCCAATTCCCCGAACTCTAGCAATCACAGCTTTTGGAGAAATGGATGTTTCTATTATTGA
TGAATTACCTGCCGGTCGTAAACCTATTATTACACGCTGGGTGAAGCACGAGCAGATAGGTGCTGTGTTGGAATGGGTAA
AAGGTGAATTGCAAAAAGATGCTCAAGTGTATGTCATTTCACCGTTGATTGAAGAATCAGAAGCTTTAGATTTAAAGAAT
GCAGTAGCATTGCATGCTGAATTATCTACTTATTTTGAAGGAATTGCTAAGGTTGCTCTTGTACATGGACGTATGAAAAA
TGATGAAAAAGATGCTATAATGCAAGATTTCAAGGATAAAAAAAGTCATATTTTAGTATCCACAACAGTTATTGAAGTAG
GGGTAAATGTCCCAAATGCAACGATCATGATTATTATGGATGCCGATCGTTTTGGATTAAGCCAGCTACATCAACTTCGT
GGGCGTGTTGGTCGTGGATATAAACAATCATACGCTGTTTTAGTGGCTAATCCCAAAACTGATTCGGGGAAAAAACGAAT
GACAATCATGACAGAAACGACAGATGGTTTCGTTTTGGCTGAGTCGGATTTAAAAATGCGTGGTTCTGGTGAAATCTTTG
GTACTCGTCAGTCTGGAATTCCAGAATTTCAAGTAGCTGATATCGTTGAGGATTATCCTATTTTAGAAGAAGCCAGACGT
GTTGCTAGTGATATTGTCAAAGATAATAATTGGAAAGAAAATACAGAATGGGCACTTATTCTAGATAATTTACGCCAACA
TTCAGATTTTGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-157)

DEAD/DEAH box helicase (DEAD)

(254-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

Helicase conserved C-terminal domain (Helicase_C)

(458-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.386

100

0.714
  recG/mmsA Streptococcus pneumoniae R36A

71.386

100

0.714
  recG Bacillus subtilis subsp. subtilis str. 168

50.075

99.404

0.498
  recG Neisseria meningitidis strain C311

39.117

97.914

0.383