Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   QN329_RS04455 Genome accession   NZ_CP135103
Coordinates   823112..823621 (+) Length   169 a.a.
NCBI ID   WP_001883456.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 818112..828621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS04430 (QN329_04455) - 818131..819000 (+) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -
  QN329_RS04435 (QN329_04460) - 819135..820331 (+) 1197 WP_001096753.1 phosphoglycerate kinase -
  QN329_RS04440 (QN329_04465) - 820594..821133 (+) 540 WP_000854121.1 FUSC family protein -
  QN329_RS04445 (QN329_04470) - 821213..821584 (+) 372 WP_161512899.1 MerR family transcriptional regulator -
  QN329_RS04450 (QN329_04475) glnA 821618..822964 (+) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  QN329_RS04455 (QN329_04480) lytF 823112..823621 (+) 510 WP_001883456.1 CHAP domain-containing protein Regulator
  QN329_RS04460 (QN329_04485) rnjA 823783..825462 (-) 1680 WP_000065498.1 ribonuclease J1 -
  QN329_RS04465 (QN329_04490) - 825516..825746 (-) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  QN329_RS04470 (QN329_04495) tsaB 825925..826617 (+) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  QN329_RS04475 (QN329_04500) rimI 826619..827026 (+) 408 WP_000445943.1 ribosomal protein S18-alanine N-acetyltransferase -
  QN329_RS04480 (QN329_04505) tsaD 827102..828112 (+) 1011 WP_000655084.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18360.32 Da        Isoelectric Point: 4.4055

>NTDB_id=809933 QN329_RS04455 WP_001883456.1 823112..823621(+) (lytF) [Streptococcus agalactiae strain HU36/21]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADVNTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=809933 QN329_RS04455 WP_001883456.1 823112..823621(+) (lytF) [Streptococcus agalactiae strain HU36/21]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGTGAATACATATAACTATGCAGTAGATGTAGACTATCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414