Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   QN325_RS04375 Genome accession   NZ_CP135101
Coordinates   825857..827872 (+) Length   671 a.a.
NCBI ID   WP_000926638.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU13/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820857..832872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN325_RS04355 (QN325_04345) - 821658..822665 (+) 1008 WP_000505722.1 3-deoxy-7-phosphoheptulonate synthase -
  QN325_RS04360 (QN325_04350) acpS 822690..823049 (+) 360 WP_000635015.1 holo-ACP synthase -
  QN325_RS04365 (QN325_04355) alr 823046..824146 (+) 1101 WP_000625946.1 alanine racemase -
  QN325_RS04370 (QN325_04360) - 824239..825777 (+) 1539 WP_000043263.1 CHAP domain-containing protein -
  QN325_RS04375 (QN325_04365) recG/mmsA 825857..827872 (+) 2016 WP_000926638.1 ATP-dependent DNA helicase RecG Machinery gene
  QN325_RS04380 (QN325_04370) - 828163..829077 (+) 915 WP_000939995.1 aldo/keto reductase family oxidoreductase -
  QN325_RS04385 (QN325_04375) aroE 829175..830053 (+) 879 WP_001086862.1 shikimate dehydrogenase -
  QN325_RS04390 (QN325_04380) - 830088..831050 (-) 963 WP_000723060.1 asparaginase -
  QN325_RS04395 (QN325_04385) - 831119..832501 (+) 1383 WP_000974895.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75318.84 Da        Isoelectric Point: 6.7516

>NTDB_id=809730 QN325_RS04375 WP_000926638.1 825857..827872(+) (recG/mmsA) [Streptococcus agalactiae strain HU13/21]
MLLQSPISNLKGFGPKSAEKFQKLDIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEKAVITGLVVTPANVQYYGFKRNRLS
FKLRQGEAVLNVSFFNQPYLADKIELGQEVAVFGKWDATKSAITGMKVLAQVEDDMQPVYRVAQGISQYTLIKAIKSAFE
ISAHLELKENLPATLLEKYRLMGRSQACLAMHFPKDITEYKQALRRIKFEELFYFQMNLQVLKSENKSETNGLPIFYSKH
AMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVGSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYIS
LQELFPDLSIAILTSGMKAAVKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDAQVYVISPLIEESEALDLKN
AVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGYKQSYAVLVANPKTDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR
VASDIVKDNNWKENTEWGLILDNLRQHSDFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=809730 QN325_RS04375 WP_000926638.1 825857..827872(+) (recG/mmsA) [Streptococcus agalactiae strain HU13/21]
ATGCTATTACAATCACCAATTTCTAATCTTAAGGGATTTGGACCAAAATCAGCAGAAAAATTTCAGAAATTAGATATTTA
TACAGTAGAAGATTTACTTCTTTATTATCCGTTTCGCTATGAAGATTTTAAATCAAAATCTGTTTTTGATTTAGTGGATG
GTGAAAAAGCAGTCATTACAGGCTTAGTCGTTACTCCAGCTAATGTACAATATTATGGTTTTAAACGTAACCGTTTAAGT
TTTAAATTGCGTCAAGGGGAAGCTGTCTTAAATGTTAGTTTTTTTAATCAACCCTATTTAGCTGATAAAATAGAACTTGG
TCAAGAGGTAGCTGTCTTTGGTAAATGGGATGCAACTAAATCAGCTATTACTGGGATGAAGGTTTTAGCTCAAGTTGAAG
ATGACATGCAACCTGTTTATCGCGTAGCTCAGGGAATTTCACAGTATACTTTGATTAAAGCTATTAAGTCAGCTTTTGAA
ATCAGTGCGCATTTGGAATTGAAGGAAAATTTACCAGCTACTTTATTGGAAAAATACCGATTGATGGGTCGTAGTCAGGC
TTGTTTAGCTATGCATTTCCCAAAAGATATCACAGAGTATAAGCAAGCGCTCCGTCGGATTAAATTTGAAGAATTATTTT
ACTTTCAAATGAACCTTCAAGTTTTGAAATCCGAAAATAAATCTGAAACAAATGGTTTGCCTATTTTTTATAGTAAACAT
GCTATGGAGACAAAGATTTCATCTTTACCTTTTATTCTAACGAATGCTCAAAAGCGCTCTTTAGATGAAATATTATCTGA
TATGTCATCGGGAGCTCATATGAATCGTTTATTGCAAGGAGATGTAGGATCAGGAAAGACAGTCATTGCTGGTCTATCAA
TGTATGCAGCTTATACAGCAGGTTTTCAATCGGCTTTGATGGTTCCAACGGAAATCCTAGCTGAACAACACTACATTAGT
CTGCAAGAATTATTTCCAGATTTATCAATCGCTATATTAACTTCGGGTATGAAAGCAGCTGTCAAGCGTACGGTTTTAGC
AGCTATTGCAAATGGCTCGGTTGATATGATTGTAGGAACTCATGCTCTTATCCAGGACTCGGTACAGTACCATAAACTGG
GGCTTGTAATTACAGACGAGCAACATCGTTTTGGTGTTAAACAGCGTAGAATTTTCCGTGAAAAGGGAGAAAATCCTGAT
GTTTTAATGATGACAGCCACCCCAATTCCCCGAACTCTAGCAATCACAGCTTTTGGAGAAATGGATGTTTCTATTATTGA
TGAATTACCTGCCGGTCGTAAACCTATTATTACACGCTGGGTGAAGCACGAGCAGCTAGGTACTGTGTTGGAATGGGTAA
AAGGTGAATTGCAAAAAGATGCTCAAGTGTATGTCATTTCACCGTTGATTGAAGAATCAGAAGCTTTAGATTTAAAGAAT
GCAGTAGCATTGCATGCTGAATTATCTACTTATTTTGAAGGAATTGCTAAGGTTGCTCTTGTACATGGACGTATGAAAAA
TGATGAAAAAGATGCTATAATGCAAGATTTCAAGGATAAAAAAAGTCATATTTTAGTATCTACAACAGTTATTGAAGTAG
GGGTAAATGTCCCAAATGCAACGATCATGATTATTATGGATGCCGATCGTTTTGGATTAAGCCAGCTACATCAACTTCGT
GGGCGTGTTGGTCGTGGATATAAACAATCATACGCTGTTTTAGTGGCTAATCCCAAAACTGATTCGGGGAAAAAACGAAT
GACAATCATGACAGAAACGACAGATGGTTTCGTTTTGGCTGAGTCGGATTTAAAAATGCGTGGTTCTGGTGAAATCTTTG
GTACTCGTCAGTCTGGAATTCCAGAATTTCAAGTAGCTGATATCGTTGAGGATTATCCTATTTTAGAAGAAGCCAGACGT
GTTGCTAGTGATATTGTCAAAGATAATAATTGGAAAGAAAATACAGAATGGGGACTTATTCTAGATAATTTACGCCAACA
TTCAGATTTTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(458-566)

RecG wedge domain (RecG_wedge)

(7-157)

DEAD/DEAH box helicase (DEAD)

(254-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.982

100

0.72
  recG/mmsA Streptococcus pneumoniae R36A

71.982

100

0.72
  recG Bacillus subtilis subsp. subtilis str. 168

50.075

99.404

0.498
  recG Neisseria meningitidis strain C311

39.024

97.765

0.382