Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RPM50_RS22470 Genome accession   NZ_CP135099
Coordinates   4897120..4897527 (+) Length   135 a.a.
NCBI ID   WP_003084583.1    Uniprot ID   A0A0H2ZL28
Organism   Pseudomonas aeruginosa strain Paer3125     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4892120..4902527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM50_RS22440 (RPM50_22440) - 4892168..4893172 (-) 1005 WP_003084569.1 aspartate carbamoyltransferase catalytic subunit -
  RPM50_RS22445 (RPM50_22445) pyrR 4893196..4893708 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RPM50_RS22450 (RPM50_22450) ruvX 4893820..4894254 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  RPM50_RS22455 (RPM50_22455) - 4894254..4894823 (-) 570 WP_033991523.1 YqgE/AlgH family protein -
  RPM50_RS22460 (RPM50_22460) - 4894872..4895765 (-) 894 WP_003084580.1 TonB family protein -
  RPM50_RS22465 (RPM50_22465) gshB 4895912..4896865 (-) 954 WP_003100943.1 glutathione synthase -
  RPM50_RS22470 (RPM50_22470) pilG 4897120..4897527 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  RPM50_RS22475 (RPM50_22475) pilH 4897574..4897939 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  RPM50_RS22480 (RPM50_22480) - 4897990..4898526 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  RPM50_RS22485 (RPM50_22485) pilJ 4898611..4900659 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  RPM50_RS22490 (RPM50_22490) pilK 4900720..4901595 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14718.11 Da        Isoelectric Point: 7.1340

>NTDB_id=809653 RPM50_RS22470 WP_003084583.1 4897120..4897527(+) (pilG) [Pseudomonas aeruginosa strain Paer3125]
MEQQSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPSFTPVDAVS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=809653 RPM50_RS22470 WP_003084583.1 4897120..4897527(+) (pilG) [Pseudomonas aeruginosa strain Paer3125]
ATGGAACAGCAATCCGACGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCCGAAACACTGCT
GAAAAAGGTCGGTTGCGACGTGATCACGGCAATCGACGGCTTCGATGCCCTGGCGAAGATCGCCGATACCCATCCGAACA
TCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGCGCGTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCCGACCAGTA
CCTCACCAAGCCGTTCAGCAAGGAAGAGCTGCTGGGCGCGATCAAGGCACACGTACCCAGCTTCACCCCGGTGGACGCCG
TTTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.803

94.074

0.704
  vicR Streptococcus mutans UA159

44.444

86.667

0.385