Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RPM50_RS22475 Genome accession   NZ_CP135099
Coordinates   4897574..4897939 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain Paer3125     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4892574..4902939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM50_RS22445 (RPM50_22445) pyrR 4893196..4893708 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RPM50_RS22450 (RPM50_22450) ruvX 4893820..4894254 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  RPM50_RS22455 (RPM50_22455) - 4894254..4894823 (-) 570 WP_033991523.1 YqgE/AlgH family protein -
  RPM50_RS22460 (RPM50_22460) - 4894872..4895765 (-) 894 WP_003084580.1 TonB family protein -
  RPM50_RS22465 (RPM50_22465) gshB 4895912..4896865 (-) 954 WP_003100943.1 glutathione synthase -
  RPM50_RS22470 (RPM50_22470) pilG 4897120..4897527 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  RPM50_RS22475 (RPM50_22475) pilH 4897574..4897939 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  RPM50_RS22480 (RPM50_22480) - 4897990..4898526 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  RPM50_RS22485 (RPM50_22485) pilJ 4898611..4900659 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  RPM50_RS22490 (RPM50_22490) pilK 4900720..4901595 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=809654 RPM50_RS22475 WP_003084587.1 4897574..4897939(+) (pilH) [Pseudomonas aeruginosa strain Paer3125]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=809654 RPM50_RS22475 WP_003084587.1 4897574..4897939(+) (pilH) [Pseudomonas aeruginosa strain Paer3125]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364