Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HT079_RS11015 Genome accession   NZ_AP023067
Coordinates   2100641..2100958 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19853     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095641..2105958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT079_RS10975 - 2096498..2096635 (-) 138 WP_172760541.1 hypothetical protein -
  HT079_RS10980 (TUM19853C_20870) - 2096649..2097455 (-) 807 Protein_2119 opacity family porin -
  HT079_RS10990 (TUM19853C_20880) pilE 2098037..2098456 (-) 420 WP_172760461.1 pilin Machinery gene
  HT079_RS10995 (TUM19853C_20890) lpxC 2098576..2099499 (-) 924 WP_172760462.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  HT079_RS12300 (TUM19853C_20900) - 2100001..2100717 (-) 717 WP_366557442.1 pilin -
  HT079_RS11015 (TUM19853C_20910) pilE 2100641..2100958 (-) 318 WP_003697861.1 pilin Machinery gene
  HT079_RS11020 - 2101331..2101462 (-) 132 WP_010356054.1 hypothetical protein -
  HT079_RS11025 (TUM19853C_20920) - 2101547..2102236 (-) 690 WP_172760388.1 M48 family metallopeptidase -
  HT079_RS11030 (TUM19853C_20930) - 2102233..2102976 (-) 744 WP_172760387.1 lysophospholipid acyltransferase family protein -
  HT079_RS11035 (TUM19853C_20940) gmhB 2103006..2103569 (-) 564 WP_050155465.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  HT079_RS11040 (TUM19853C_20950) - 2103712..2105365 (+) 1654 Protein_2128 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=80960 HT079_RS11015 WP_003697861.1 2100641..2100958(-) (pilE) [Neisseria gonorrhoeae strain TUM19853]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=80960 HT079_RS11015 WP_003697861.1 2100641..2100958(-) (pilE) [Neisseria gonorrhoeae strain TUM19853]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment