Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HT079_RS10990 Genome accession   NZ_AP023067
Coordinates   2098037..2098456 (-) Length   139 a.a.
NCBI ID   WP_172760461.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19853     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2093037..2103456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT079_RS10965 (TUM19853C_20850) msrAB 2093417..2094985 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  HT079_RS10970 (TUM19853C_20860) pilA 2095131..2096384 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  HT079_RS10975 - 2096498..2096635 (-) 138 WP_172760541.1 hypothetical protein -
  HT079_RS10980 (TUM19853C_20870) - 2096649..2097455 (-) 807 Protein_2119 opacity family porin -
  HT079_RS10990 (TUM19853C_20880) pilE 2098037..2098456 (-) 420 WP_172760461.1 pilin Machinery gene
  HT079_RS10995 (TUM19853C_20890) lpxC 2098576..2099499 (-) 924 WP_172760462.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  HT079_RS12300 (TUM19853C_20900) - 2100001..2100717 (-) 717 WP_366557442.1 pilin -
  HT079_RS11015 (TUM19853C_20910) pilE 2100641..2100958 (-) 318 WP_003697861.1 pilin Machinery gene
  HT079_RS11020 - 2101331..2101462 (-) 132 WP_010356054.1 hypothetical protein -
  HT079_RS11025 (TUM19853C_20920) - 2101547..2102236 (-) 690 WP_172760388.1 M48 family metallopeptidase -
  HT079_RS11030 (TUM19853C_20930) - 2102233..2102976 (-) 744 WP_172760387.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15056.83 Da        Isoelectric Point: 9.7771

>NTDB_id=80959 HT079_RS10990 WP_172760461.1 2098037..2098456(-) (pilE) [Neisseria gonorrhoeae strain TUM19853]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPKDNTSAGVASPASNIKGKYVQKVEVNNGVVTAQMKPSGVNNEI
KGKRLSLWGRRENGSVKWFCGQPVTRTAGTDDVAKAGNDNEKINTKHLPSTCRDKSTAT

Nucleotide


Download         Length: 420 bp        

>NTDB_id=80959 HT079_RS10990 WP_172760461.1 2098037..2098456(-) (pilE) [Neisseria gonorrhoeae strain TUM19853]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCCCCGCCTCCAACATCAAAG
GCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAATGAAATC
AAAGGCAAAAGACTATCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAC
CGCCGGCACCGACGACGTCGCCAAAGCCGGCAACGACAACGAAAAAATCAACACCAAGCACCTGCCGTCAACCTGCCGCG
ATAAATCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.714

100

0.712
  pilE Neisseria gonorrhoeae MS11

71.014

99.281

0.705

Multiple sequence alignment