Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RPM47_RS18955 Genome accession   NZ_CP135098
Coordinates   4083058..4085034 (+) Length   658 a.a.
NCBI ID   WP_009459603.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Paer2090     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4078058..4090034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM47_RS18940 (RPM47_18940) - 4079137..4080303 (-) 1167 WP_223656181.1 glutathione-independent formaldehyde dehydrogenase -
  RPM47_RS18945 (RPM47_18945) - 4080818..4081759 (-) 942 WP_009459599.1 LysR family transcriptional regulator -
  RPM47_RS18950 (RPM47_18950) - 4082252..4082683 (+) 432 WP_009459601.1 DUF488 family protein -
  RPM47_RS18955 (RPM47_18955) uvrB 4083058..4085034 (+) 1977 WP_009459603.1 excinuclease ABC subunit UvrB Machinery gene
  RPM47_RS18960 (RPM47_18960) - 4085185..4086090 (-) 906 WP_009459605.1 LysR family transcriptional regulator -
  RPM47_RS18965 (RPM47_18965) - 4086245..4086652 (+) 408 WP_009459611.1 ketosteroid isomerase-related protein -
  RPM47_RS18970 (RPM47_18970) - 4086654..4087262 (+) 609 WP_009459619.1 GNAT family acetyltransferase -
  RPM47_RS18975 (RPM47_18975) - 4087259..4088149 (+) 891 WP_009459621.1 carbon-nitrogen hydrolase family protein -
  RPM47_RS18980 (RPM47_18980) frmR 4088432..4088707 (+) 276 WP_007182548.1 formaldehyde-responsive transcriptional repressor FrmR -
  RPM47_RS18985 (RPM47_18985) - 4088767..4089876 (+) 1110 WP_011871467.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74219.38 Da        Isoelectric Point: 5.3150

>NTDB_id=809551 RPM47_RS18955 WP_009459603.1 4083058..4085034(+) (uvrB) [Pseudomonas aeruginosa strain Paer2090]
MSTGTFILHSSYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYGEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPEAYRALQI
ALSPGVKLNQRELIRRLALLQYDRTERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLDPVTGKTLGAID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMREVGYCSGMENYSCYFSERDPA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKETLIDYGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDY
ELRVSKDRVVEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVARNENGKAILYADAVTP
AMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRRQLDGLYRQFIYI

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=809551 RPM47_RS18955 WP_009459603.1 4083058..4085034(+) (uvrB) [Pseudomonas aeruginosa strain Paer2090]
ATGTCAACCGGTACGTTCATTCTGCACTCCAGCTATACGCCGGCGGGGGACCAGCCAGAGGCGATAGCGCGCCTGCTATC
GGACATAGAAGAAGGTGCGACACACCAGACGCTGAAGGGTATCACCGGCTCTGGTAAGACCTTTACGATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCCACGTTGATCTTGGCTCCTAACAAGACATTGACCGCGCAGCTTTATGGTGAAATGAAGCAC
TTCTTTCCTGAGAATGCTGTCGAGTACTTCGTTTCCTACTACGATTATTTTCAGCCCGAGATTTATATGCCGGGCACCGA
TCGTTTCATTCCAAAGGACTCGGCCATCAACGATCACCTTGAGCGCCTACGCCTGTCCACGACCAAATCCTTGATTGAGC
GCCGCGATGTGATCGTCGTCGCTTCGGTGTCTTCAATCTACGGCCTGGGTGACCCGGAGGCGTACCGAGCGTTGCAGATC
GCTCTGTCCCCTGGGGTCAAACTAAACCAGAGAGAGCTGATTCGTCGTTTGGCTCTGCTGCAATATGATCGCACTGAGCG
CACTCTCAAACGTGCAACGTTTCGCGCTCAAGGTGATGTGATCGATATCTTTCCTGCTGATTCCGAGCATAGGGCAGTTC
GGGTGGAACTGCTGGATGACTCTGTTGCGTCTGTTCAATGGCTAGACCCTGTTACAGGTAAAACGCTTGGGGCAATTGAC
CATTACTTGGTTTCGCCAAAGACGCTTTTTGCACCGCCCACGAATAAAATAGATTCCGCGTCCAAGAAGATACTCGCTGA
TATGGAAGAGCGGGTTGCCGAGCTGAACAGGAATAATCGCTTGGTCGAGGCAAACAGGCTGTACGAGCGGATCACGCATG
ACGTGGAGATGATGCGCGAGGTAGGCTATTGTTCGGGCATGGAAAATTATTCCTGCTACTTCAGCGAACGGGACCCGGCC
TCGCCTCCGATCACATTGCTGGATTACCTGCCGAAAGATGGGCTTCTGTTCGTCGATGAATCCCACGTCATGGTGCCACA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGAGACGTTGATAGATTACGGGTTCCGCTTGCCTTCGTCTAAGA
ACAATCGCCCGTTGAACTTTGGTGAATTTGAGAAGGTCAAGCCTCAGACCATCTTTGTTTCCGCTACTCCGGGAGACTAC
GAGCTGAGGGTGTCGAAAGACAGGGTTGTCGAACAAGTTATCAGACCAACGGGACTGCTTGATCCCAAGGTTGAGGTGCG
GAAAGCGGACGGATACATAGATGACCTGCTTGCCGAAATATCGAAGTGCGTGAAGAAGAAAAATCGCGTGCTCGTGACTA
CGCTGACGAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACAACGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAAGCGGAGGATCGTGTTGAGATCATCAATGGCCTGCGCGCAGGAGAGTTCGATGTTTTGATTGGGATTAGTCTTTT
GCGCGAAGGGCTGGATATTCCAGAGGCATCATTGGTTGCTATTCTCGATGCAGACCGTGCAGGATTCTTGCGTTCGGCCC
ATGCTCTCATTCAGATGATAGGTCGAGTCGCTCGGAATGAAAACGGCAAGGCGATCTTGTACGCCGACGCGGTGACTCCG
GCGATGAAACAGGCGATCGATGAAACCAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAGGAAAATGGGATTTCTCC
GGCCTCGTCTGTGCGAAAACTAGCAGGAGAAGAGACGAATACGGAGGAGCCCACCGTTCACTCCGAGGCTTTCTGCGAGA
ATTTGTCCGACCTTTGCGATCAGATCACTGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGACGAGCAGCGC
GTCGAAGATATTCGTCGTCAGTTGGATGGTTTGTACCGGCAATTCATTTACATCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-114)

Ultra-violet resistance protein B (UvrB)

(553-593)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

UvrB interaction domain (UvrB_inter)

(160-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae R6

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae D39

52.462

89.514

0.47