Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   P3X35_RS18655 Genome accession   NZ_CP120920
Coordinates   3697496..3698653 (-) Length   385 a.a.
NCBI ID   WP_020453119.1    Uniprot ID   A0A6I7TVP7
Organism   Bacillus paralicheniformis strain SYN-191     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692496..3703653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS18625 (P3X35_18625) - 3692734..3693153 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  P3X35_RS18630 (P3X35_18630) comFC 3693212..3693949 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  P3X35_RS18635 (P3X35_18635) - 3693906..3694190 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  P3X35_RS18640 (P3X35_18640) comFA 3694245..3695639 (-) 1395 WP_023856393.1 DEAD/DEAH box helicase Machinery gene
  P3X35_RS18645 (P3X35_18645) - 3695763..3696605 (-) 843 WP_020453118.1 DegV family protein -
  P3X35_RS18650 (P3X35_18650) degU 3696725..3697414 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  P3X35_RS18655 (P3X35_18655) degS 3697496..3698653 (-) 1158 WP_020453119.1 histidine kinase Regulator
  P3X35_RS18660 (P3X35_18660) - 3698876..3699514 (+) 639 WP_023856394.1 YigZ family protein -
  P3X35_RS18665 (P3X35_18665) - 3699529..3700608 (+) 1080 WP_023856395.1 LCP family protein -
  P3X35_RS18670 (P3X35_18670) - 3700661..3701044 (-) 384 WP_023856396.1 hypothetical protein -
  P3X35_RS18675 (P3X35_18675) - 3701153..3702217 (-) 1065 WP_025810697.1 MraY family glycosyltransferase -
  P3X35_RS18680 (P3X35_18680) - 3702348..3703535 (-) 1188 WP_023856398.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44650.34 Da        Isoelectric Point: 6.7862

>NTDB_id=809306 P3X35_RS18655 WP_020453119.1 3697496..3698653(-) (degS) [Bacillus paralicheniformis strain SYN-191]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEDRRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=809306 P3X35_RS18655 WP_020453119.1 3697496..3698653(-) (degS) [Bacillus paralicheniformis strain SYN-191]
GTGAGTGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGACGGGAGCAAGGA
TGAGGTCTTTCAAATCGGAGAGCAGTCCCGTCAGCAATATGAAGGCTTGGTAGAAGAGCTGAAGCAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGAAACCGCTTGTCTGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGCCAGATTACCGTCGTCTTAAACTATTTAAATCAGGATCTGCGCCAGGTTGGCGTTCTCCTA
GAAGATGCGCAGGCCAAACAGGATTTCGGACTGCGGATCATCGAAGCCCAAGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGCCCTGCGCAAATGCTGGCCAACGTCATGATGAGATCTGAGCTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAGAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGACGATTTGGGATTAATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATCCATTTCCAATGCATCGGAGAATCTGAAGATAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TTTTCCGTCTTGCACAGGAAGCAGTGACAAACGCCTTAAAACACTCCGAATCAACTGAGATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGTTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTTAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGACTTGCTCGAAGGTTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATTTTGATTAAAGTTCCGCTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894