Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P3X35_RS18650 Genome accession   NZ_CP120920
Coordinates   3696725..3697414 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain SYN-191     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691725..3702414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS18615 (P3X35_18615) - 3691893..3692369 (-) 477 WP_025810700.1 flagellar protein FlgN -
  P3X35_RS18620 (P3X35_18620) flgM 3692388..3692654 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  P3X35_RS18625 (P3X35_18625) - 3692734..3693153 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  P3X35_RS18630 (P3X35_18630) comFC 3693212..3693949 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  P3X35_RS18635 (P3X35_18635) - 3693906..3694190 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  P3X35_RS18640 (P3X35_18640) comFA 3694245..3695639 (-) 1395 WP_023856393.1 DEAD/DEAH box helicase Machinery gene
  P3X35_RS18645 (P3X35_18645) - 3695763..3696605 (-) 843 WP_020453118.1 DegV family protein -
  P3X35_RS18650 (P3X35_18650) degU 3696725..3697414 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  P3X35_RS18655 (P3X35_18655) degS 3697496..3698653 (-) 1158 WP_020453119.1 histidine kinase Regulator
  P3X35_RS18660 (P3X35_18660) - 3698876..3699514 (+) 639 WP_023856394.1 YigZ family protein -
  P3X35_RS18665 (P3X35_18665) - 3699529..3700608 (+) 1080 WP_023856395.1 LCP family protein -
  P3X35_RS18670 (P3X35_18670) - 3700661..3701044 (-) 384 WP_023856396.1 hypothetical protein -
  P3X35_RS18675 (P3X35_18675) - 3701153..3702217 (-) 1065 WP_025810697.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=809305 P3X35_RS18650 WP_003185730.1 3696725..3697414(-) (degU) [Bacillus paralicheniformis strain SYN-191]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=809305 P3X35_RS18650 WP_003185730.1 3696725..3697414(-) (degU) [Bacillus paralicheniformis strain SYN-191]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987