Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P3X35_RS18640 Genome accession   NZ_CP120920
Coordinates   3694245..3695639 (-) Length   464 a.a.
NCBI ID   WP_023856393.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3689245..3700639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS18605 (P3X35_18605) flgL 3689432..3690343 (-) 912 WP_023856389.1 flagellar hook-associated protein FlgL -
  P3X35_RS18610 (P3X35_18610) flgK 3690354..3691877 (-) 1524 WP_025810701.1 flagellar hook-associated protein FlgK -
  P3X35_RS18615 (P3X35_18615) - 3691893..3692369 (-) 477 WP_025810700.1 flagellar protein FlgN -
  P3X35_RS18620 (P3X35_18620) flgM 3692388..3692654 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  P3X35_RS18625 (P3X35_18625) - 3692734..3693153 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  P3X35_RS18630 (P3X35_18630) comFC 3693212..3693949 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  P3X35_RS18635 (P3X35_18635) - 3693906..3694190 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  P3X35_RS18640 (P3X35_18640) comFA 3694245..3695639 (-) 1395 WP_023856393.1 DEAD/DEAH box helicase Machinery gene
  P3X35_RS18645 (P3X35_18645) - 3695763..3696605 (-) 843 WP_020453118.1 DegV family protein -
  P3X35_RS18650 (P3X35_18650) degU 3696725..3697414 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  P3X35_RS18655 (P3X35_18655) degS 3697496..3698653 (-) 1158 WP_020453119.1 histidine kinase Regulator
  P3X35_RS18660 (P3X35_18660) - 3698876..3699514 (+) 639 WP_023856394.1 YigZ family protein -
  P3X35_RS18665 (P3X35_18665) - 3699529..3700608 (+) 1080 WP_023856395.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53060.82 Da        Isoelectric Point: 9.7663

>NTDB_id=809304 P3X35_RS18640 WP_023856393.1 3694245..3695639(-) (comFA) [Bacillus paralicheniformis strain SYN-191]
MIHIEHPASYSCELRSCLEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGMEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPLRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=809304 P3X35_RS18640 WP_023856393.1 3694245..3695639(-) (comFA) [Bacillus paralicheniformis strain SYN-191]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGATGGAAATCGCCGCTTTATACGGAGGAAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTACGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCTGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGTAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(318-424)

Type III restriction enzyme, res subunit (ResIII)

(122-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.205

98.707

0.565