Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   P3X35_RS16750 Genome accession   NZ_CP120920
Coordinates   3325726..3325866 (-) Length   46 a.a.
NCBI ID   WP_003184860.1    Uniprot ID   P69890
Organism   Bacillus paralicheniformis strain SYN-191     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3320726..3330866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS16725 (P3X35_16725) - 3320996..3321385 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  P3X35_RS16730 (P3X35_16730) comA 3321402..3322040 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  P3X35_RS16735 (P3X35_16735) comP 3322127..3324448 (-) 2322 WP_023856154.1 ATP-binding protein Regulator
  P3X35_RS16740 (P3X35_16740) comX 3324488..3324652 (-) 165 WP_023856155.1 competence pheromone ComX -
  P3X35_RS16745 (P3X35_16745) - 3324667..3325536 (-) 870 WP_023856156.1 polyprenyl synthetase family protein -
  P3X35_RS16750 (P3X35_16750) degQ 3325726..3325866 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  P3X35_RS16755 (P3X35_16755) - 3326478..3326699 (+) 222 WP_229029875.1 hypothetical protein -
  P3X35_RS16760 (P3X35_16760) - 3326742..3327962 (-) 1221 WP_020452793.1 HDOD domain-containing protein -
  P3X35_RS16765 (P3X35_16765) - 3328140..3329609 (-) 1470 WP_023856157.1 nicotinate phosphoribosyltransferase -
  P3X35_RS16770 (P3X35_16770) - 3329627..3330178 (-) 552 WP_026580053.1 isochorismatase family cysteine hydrolase -
  P3X35_RS16775 (P3X35_16775) - 3330363..3330764 (-) 402 WP_039072963.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5747.56 Da        Isoelectric Point: 8.4596

>NTDB_id=809298 P3X35_RS16750 WP_003184860.1 3325726..3325866(-) (degQ) [Bacillus paralicheniformis strain SYN-191]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=809298 P3X35_RS16750 WP_003184860.1 3325726..3325866(-) (degQ) [Bacillus paralicheniformis strain SYN-191]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTACACATATCTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P69890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

71.429

91.304

0.652