Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   P3X35_RS16735 Genome accession   NZ_CP120920
Coordinates   3322127..3324448 (-) Length   773 a.a.
NCBI ID   WP_023856154.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3317127..3329448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS16695 (P3X35_16695) - 3317592..3318023 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  P3X35_RS16700 (P3X35_16700) - 3318023..3318364 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  P3X35_RS16705 (P3X35_16705) - 3318357..3319835 (+) 1479 WP_025809735.1 Na+/H+ antiporter subunit D -
  P3X35_RS16710 (P3X35_16710) - 3319841..3320317 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  P3X35_RS16715 (P3X35_16715) - 3320317..3320601 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  P3X35_RS16720 (P3X35_16720) mnhG 3320585..3320959 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  P3X35_RS16725 (P3X35_16725) - 3320996..3321385 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  P3X35_RS16730 (P3X35_16730) comA 3321402..3322040 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  P3X35_RS16735 (P3X35_16735) comP 3322127..3324448 (-) 2322 WP_023856154.1 ATP-binding protein Regulator
  P3X35_RS16740 (P3X35_16740) comX 3324488..3324652 (-) 165 WP_023856155.1 competence pheromone ComX -
  P3X35_RS16745 (P3X35_16745) - 3324667..3325536 (-) 870 WP_023856156.1 polyprenyl synthetase family protein -
  P3X35_RS16750 (P3X35_16750) degQ 3325726..3325866 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  P3X35_RS16755 (P3X35_16755) - 3326478..3326699 (+) 222 WP_229029875.1 hypothetical protein -
  P3X35_RS16760 (P3X35_16760) - 3326742..3327962 (-) 1221 WP_020452793.1 HDOD domain-containing protein -

Sequence


Protein


Download         Length: 773 a.a.        Molecular weight: 88717.73 Da        Isoelectric Point: 5.9489

>NTDB_id=809297 P3X35_RS16735 WP_023856154.1 3322127..3324448(-) (comP) [Bacillus paralicheniformis strain SYN-191]
MRVNYNKLSLIIILLSLSLVPYIIYVNLHSSYLGMTMQFNEKNEYQVFEIEKGSLAQSLGFEKGDVILEINGKSVEKLRA
DDGKLADELSDVKSMIVERDGEIGFVETGYELVSYESLFLFIIPMMFYLLSLFCVYFIIKSNKRLNSASAFILIVFLLVT
STAYSCSVGSAKGDSLSIYITMITFQFVPVLYLHYIYQYFKEKGKEFFNNKIFLFLYPVGLLNLLLEIFSDNLQISYSSI
KLFNLVSFLFVTIIAFALIIYGVIKNKASEQAYFLRILVITNFVAFIPFLIFYVIPYVFIGDYIFPAMFVVPFLLIIPFS
LVYQFIATKIYDIEFLLGRFKYYGLLAILPSLTAVGVFTLTQELSNSLNTVKNTIFIYFIMLGVFYLKEILDFRFRLKRF
SEKFNYQDSVFKFTQLIRSSTSLAQVLRELSQTILDVLPVSQAYVLELKSDGTVGLLENNANDQVWKPYEKEAFRAITDI
GKIVEVDRGFLIKIGERGGTSYVMLCLSVLNTPRLTRDEISWLETLAFYTSVSLENVLKIGELMEHLEHVKKEGPNPAWL
NKLMFAIEEKQRSDLARDLHDSVLQDMISLKHQSEMFLADFEKDKVCTNQIRQRLINMNEQMSTVIQTTRETCQELRPQL
LYDLGLVKALSKLAAQHQESSSIDKIRLNTERFSKVLDLDTQLNLYRIVQELLSNAVKHSKANEVLIMLVCIKEKVVLHY
EDDGIGFDPDKLYQNSASMGLSGIRERVRALNGSLDIQTAEGKGFRVAIEMEL

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=809297 P3X35_RS16735 WP_023856154.1 3322127..3324448(-) (comP) [Bacillus paralicheniformis strain SYN-191]
ATGCGTGTTAATTATAACAAACTATCTTTAATTATTATTTTGCTAAGCCTCTCCTTGGTTCCTTATATTATCTATGTAAA
TCTGCATTCTAGTTACCTTGGAATGACAATGCAATTTAATGAAAAAAATGAATATCAAGTATTCGAGATTGAAAAAGGGT
CACTAGCCCAATCCCTAGGTTTTGAAAAAGGGGATGTTATATTAGAGATAAATGGAAAAAGTGTAGAAAAATTAAGGGCC
GATGATGGAAAATTAGCTGATGAATTAAGTGATGTTAAATCTATGATCGTTGAAAGAGATGGAGAGATAGGGTTTGTAGA
GACCGGATATGAATTGGTAAGTTATGAAAGCCTATTTCTATTTATCATTCCAATGATGTTTTATCTCCTTTCTCTTTTTT
GTGTTTATTTCATAATAAAATCAAACAAAAGGTTAAATTCGGCTTCCGCTTTTATTTTAATTGTTTTTCTGCTTGTTACA
TCAACAGCTTATTCTTGTTCTGTGGGATCTGCAAAGGGAGATAGTTTAAGTATCTATATAACAATGATAACTTTTCAATT
CGTTCCTGTTTTGTATCTCCACTATATTTATCAATATTTCAAGGAAAAAGGAAAAGAGTTTTTCAATAATAAAATATTTC
TTTTCCTATATCCGGTGGGTTTATTGAATTTGCTATTGGAAATTTTCAGTGATAATTTGCAGATTTCTTATAGTTCCATT
AAGCTCTTTAACTTGGTATCTTTCTTGTTTGTTACCATTATAGCCTTTGCTCTTATCATTTATGGTGTAATAAAAAATAA
AGCTTCAGAGCAAGCCTATTTTTTAAGGATACTCGTTATCACAAATTTTGTTGCGTTTATTCCGTTCTTAATTTTCTATG
TCATACCATATGTATTTATCGGGGATTATATATTCCCGGCAATGTTTGTCGTTCCTTTTTTGTTGATTATTCCTTTCTCA
TTAGTGTATCAATTTATTGCTACCAAAATATATGACATTGAATTCTTATTGGGACGTTTTAAATACTACGGATTGTTAGC
CATTTTACCAAGCTTGACAGCTGTAGGTGTATTTACTTTAACACAAGAATTAAGTAATAGTTTGAATACAGTTAAAAACA
CTATATTTATCTATTTTATTATGTTAGGTGTTTTTTATCTCAAGGAAATTCTTGATTTTCGTTTCCGTTTAAAAAGGTTT
TCTGAAAAATTTAATTACCAAGATAGTGTATTTAAGTTTACACAGCTTATACGAAGCTCGACATCGTTAGCTCAAGTGCT
AAGGGAATTGTCTCAAACGATTCTTGATGTTTTACCTGTAAGTCAGGCTTATGTACTGGAGTTAAAGAGTGATGGAACCG
TAGGGTTACTTGAAAATAATGCAAACGATCAAGTGTGGAAGCCTTATGAAAAAGAAGCTTTTAGGGCTATCACCGACATC
GGCAAAATCGTCGAAGTCGACCGCGGATTTTTGATTAAGATCGGTGAACGGGGCGGGACTTCTTATGTCATGCTGTGTTT
GTCGGTTTTAAATACGCCTAGGCTGACGCGCGATGAGATTTCGTGGCTTGAGACGCTGGCGTTTTATACGAGTGTTTCCC
TGGAAAACGTCTTGAAAATCGGCGAGCTGATGGAGCATCTGGAACATGTGAAAAAAGAAGGGCCGAATCCGGCGTGGCTG
AATAAATTGATGTTTGCGATTGAAGAGAAGCAGAGATCTGATTTGGCCCGTGATCTTCATGATTCTGTGCTGCAGGACAT
GATTTCCTTGAAGCATCAAAGCGAGATGTTTCTGGCTGATTTTGAAAAAGATAAAGTCTGTACGAATCAAATCAGGCAAA
GGCTCATCAATATGAATGAGCAAATGTCCACCGTCATCCAGACGACAAGGGAAACGTGTCAGGAGCTGAGGCCGCAGCTG
TTGTACGATCTCGGACTGGTCAAAGCCCTTTCGAAACTGGCGGCACAGCATCAGGAGTCCTCATCGATCGATAAGATCCG
CCTCAATACGGAAAGGTTCTCAAAGGTGCTCGACCTGGACACGCAGCTGAATTTGTACAGAATTGTGCAGGAGCTTTTAA
GCAATGCGGTTAAACACTCGAAAGCTAATGAGGTTTTGATTATGCTTGTCTGCATAAAAGAAAAAGTTGTTCTTCATTAT
GAAGATGACGGCATCGGTTTTGATCCGGACAAGCTTTATCAAAACAGCGCAAGCATGGGGCTGTCGGGTATTCGCGAGCG
AGTCCGCGCGCTGAACGGCAGTCTGGATATACAGACAGCAGAAGGGAAAGGCTTCAGGGTCGCCATTGAAATGGAATTGT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

52.591

99.871

0.525