Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P3X35_RS16730 Genome accession   NZ_CP120920
Coordinates   3321402..3322040 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain SYN-191     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3316402..3327040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS16695 (P3X35_16695) - 3317592..3318023 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  P3X35_RS16700 (P3X35_16700) - 3318023..3318364 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  P3X35_RS16705 (P3X35_16705) - 3318357..3319835 (+) 1479 WP_025809735.1 Na+/H+ antiporter subunit D -
  P3X35_RS16710 (P3X35_16710) - 3319841..3320317 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  P3X35_RS16715 (P3X35_16715) - 3320317..3320601 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  P3X35_RS16720 (P3X35_16720) mnhG 3320585..3320959 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  P3X35_RS16725 (P3X35_16725) - 3320996..3321385 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  P3X35_RS16730 (P3X35_16730) comA 3321402..3322040 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  P3X35_RS16735 (P3X35_16735) comP 3322127..3324448 (-) 2322 WP_023856154.1 ATP-binding protein Regulator
  P3X35_RS16740 (P3X35_16740) comX 3324488..3324652 (-) 165 WP_023856155.1 competence pheromone ComX -
  P3X35_RS16745 (P3X35_16745) - 3324667..3325536 (-) 870 WP_023856156.1 polyprenyl synthetase family protein -
  P3X35_RS16750 (P3X35_16750) degQ 3325726..3325866 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  P3X35_RS16755 (P3X35_16755) - 3326478..3326699 (+) 222 WP_229029875.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=809296 P3X35_RS16730 WP_003184849.1 3321402..3322040(-) (comA) [Bacillus paralicheniformis strain SYN-191]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=809296 P3X35_RS16730 WP_003184849.1 3321402..3322040(-) (comA) [Bacillus paralicheniformis strain SYN-191]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778