Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RMP64_RS03545 Genome accession   NZ_CP135093
Coordinates   715074..715757 (+) Length   227 a.a.
NCBI ID   WP_029178325.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 710074..720757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS03525 (RMP64_03525) - 710137..711648 (+) 1512 WP_029178328.1 ABC transporter permease/substrate-binding protein -
  RMP64_RS03530 (RMP64_03530) - 711660..712421 (+) 762 WP_087013634.1 nuclear transport factor 2 family protein -
  RMP64_RS03535 (RMP64_03535) - 712585..713709 (+) 1125 WP_029178327.1 aminotransferase -
  RMP64_RS03540 (RMP64_03540) - 713724..714905 (-) 1182 WP_029178326.1 DUF2974 domain-containing protein -
  RMP64_RS03545 (RMP64_03545) braR 715074..715757 (+) 684 WP_029178325.1 response regulator transcription factor Regulator
  RMP64_RS03550 (RMP64_03550) - 715750..716742 (+) 993 WP_024382816.1 HAMP domain-containing sensor histidine kinase -
  RMP64_RS03555 (RMP64_03555) - 716838..717596 (+) 759 WP_024382815.1 ABC transporter ATP-binding protein -
  RMP64_RS03560 (RMP64_03560) - 717598..719610 (+) 2013 WP_043033027.1 ABC transporter permease -
  RMP64_RS03565 (RMP64_03565) - 719978..720142 (+) 165 WP_024381618.1 hypothetical protein -
  RMP64_RS03570 (RMP64_03570) - 720139..720456 (+) 318 WP_024384973.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26590.80 Da        Isoelectric Point: 4.6255

>NTDB_id=809118 RMP64_RS03545 WP_029178325.1 715074..715757(+) (braR) [Streptococcus suis strain 1652329]
MQKILLIEDDKTIRQLVAKNLINWGYQVQEVKDFQTVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVGREELMRELWNSDIFVDDNTLSVNIARLRKKLAELDLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=809118 RMP64_RS03545 WP_029178325.1 715074..715757(+) (braR) [Streptococcus suis strain 1652329]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGGCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGACGGTGTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTTCCCATTATGTTTCTATCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCTTATGGACAGGTTGTGGAAGAACTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCGGCCGTGAGGAGTTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAATATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGATCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

96.035

0.454
  vicR Streptococcus mutans UA159

38.696

100

0.392
  micA Streptococcus pneumoniae Cp1015

37.555

100

0.379