Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   RMP65_RS01890 Genome accession   NZ_CP135089
Coordinates   357848..359866 (+) Length   672 a.a.
NCBI ID   WP_074390980.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 352848..364866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS01890 (RMP65_01890) recG/mmsA 357848..359866 (+) 2019 WP_074390980.1 ATP-dependent DNA helicase RecG Machinery gene
  RMP65_RS01895 (RMP65_01895) - 359930..360889 (-) 960 WP_024407233.1 asparaginase -
  RMP65_RS01900 (RMP65_01900) - 360959..362324 (+) 1366 Protein_335 Cof-type HAD-IIB family hydrolase -
  RMP65_RS01905 (RMP65_01905) - 362340..362792 (-) 453 WP_004195772.1 universal stress protein -
  RMP65_RS01910 (RMP65_01910) - 362947..364161 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75602.10 Da        Isoelectric Point: 6.0966

>NTDB_id=808912 RMP65_RS01890 WP_074390980.1 357848..359866(+) (recG/mmsA) [Streptococcus suis strain ID34567]
MKRLCDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDFESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRL
RFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKAKASLTGMKVLAQVSDELQPVYHVAQGISQVNLVKAIKTAI
DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQLQLQMLKANNRDISNGLKIAYDA
DRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVVAGLAMFAAVTAGMQAAMMVPTEILAEQHFE
SLRQLFPELSIALLTGGMKVAERRAALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNP
DVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFISPLIEESEALDLK
NAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR
RVASQIVSVENWQEDPNWSILLANLKDGEELD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=808912 RMP65_RS01890 WP_074390980.1 357848..359866(+) (recG/mmsA) [Streptococcus suis strain ID34567]
ATGAAAAGATTATGTGATGAATTATCGGTTTTGCCAGGGATTGGTCCAAAATCGGCTGAAAAATTTTTAAAAATTAACAT
TCAGAATATTAATGATCTGTTAACTTACTATCCATTTAGATATGAAGATTTTGAGAGTAAGTCTATTTATGATTTGCAGG
ATGGTGAGAAGGCAGTGGTAGTTGGGGAGGTGGTATCTCCAGCTAATGTACAGTATTATGGTTACAAAAGAAATAGACTC
CGTTTTTCAATGAAACAGGGTGAGGTTGTCTTAGCAGTTTCGTTTTTTAATCAGCCTTATTTAGCAGATAAGATTGTTTT
GGGGCAGGATATTGCAGTTTGGGGAAAGTGGGATAAGGCTAAGGCAAGTTTGACAGGAATGAAAGTTTTGGCTCAAGTAT
CAGATGAGCTACAGCCTGTCTATCATGTGGCGCAGGGGATTTCGCAAGTAAATTTGGTTAAGGCTATTAAAACAGCTATT
GATCAGGGATATTTGCATTTATTAGAGGAGAATTTACCATCAGTTTTACGAGAGCGCTATCGGTTAATGAATCGCCGAGA
GGCGGTTTTTGCGATGCATTTTCCGACAAATTTAGAAGAGTATAGACAAGCTTTGCGACGTATGAAGTTTGAGGAATTAT
TTTATTTTCAATTACAGTTGCAAATGCTTAAAGCCAACAATCGTGATATTTCGAATGGTTTGAAGATTGCTTATGATGCT
GATAGATTGGCTATGCAGATAAGACAATTGCCGTTTGTCTTAACGGATGCTCAGTCTGGGGCTTTGGCTGAAATACTATC
AGATATGAAGTCCTATGGGCACATGAATCGTTTGCTACAAGGGGATGTTGGTTCAGGGAAGACAGTAGTTGCTGGATTGG
CTATGTTTGCTGCTGTGACTGCGGGGATGCAGGCTGCAATGATGGTCCCGACAGAAATTTTGGCGGAGCAACACTTTGAG
AGTTTGCGCCAGCTTTTTCCAGAACTTTCTATTGCTCTTTTGACAGGGGGAATGAAGGTTGCGGAGCGTCGTGCTGCTTT
AGAGGCGATTTCTAGTGGTCAGGTAGACATCATTGTAGGAACTCATGCTCTTATCCAGGAAAGTGTGACGTACCATAAGC
TTGGTTTGGTTGTGACGGATGAGCAACATCGTTTTGGTGTTAAACAGCGCCGTCTGTTTCGTGAGAAGGGTGATAATCCG
GATGTGCTTATGATGACTGCTACACCTATTCCTCGGACGTTAGCTATTACAGCTTTTGGAGATATGGATGTATCGATTAT
TAATCAGTTACCTGCTGGTCGGAAGCCAATTATCACTCGCTGGGTCAAACATCAACAGCTGCCCACGGTCTTAGATTGGC
TGGAGCGGGAGTTAGAAGTGGGTGCCCAGGTTTATTTTATCTCTCCGCTGATTGAAGAATCTGAGGCTCTAGATTTAAAG
AATGCTGTAGATCTGCAATCTGATTTACAGGCGCATTTTGGAGAGCAAGTTACAGTGGATTTGTTACACGGTAAGATGAA
AAATGACGAGAAAGATGCCATCATGCAGGCTTTTAAGGAGCGAAAAACGAATATTTTGGTTTCTACCACTGTTATTGAAG
TCGGAGTCAATGTGCCCAATGCAACGGTGATGGTTATTATGGATGCAGATCGTTTTGGTTTAAGCCAATTACATCAGTTG
AGAGGGCGTGTAGGACGTGGTCATAAGCAGTCTTATGCAGTGTTAGTTGCTAATCCTAAAACAGAGTCTGGTAAGGAACG
CATGAAAATTATGACAGAGACGACAGATGGTTTTATTTTGGCTGAAGCTGACTTGAAAATGCGTGGGTCTGGAGAAATAT
TTGGAACTCGTCAATCAGGTTTGCCAGAATTTCAGGTTGCAAATATTATCGAGGACTATCCAATTTTAGAGGAAGCAAGA
CGAGTTGCTAGTCAGATTGTTAGCGTGGAAAATTGGCAGGAGGACCCTAATTGGTCGATTTTACTTGCTAATTTGAAAGA
TGGAGAGGAATTGGATTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(13-160)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

DEAD/DEAH box helicase (DEAD)

(255-410)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.347

99.554

0.72
  recG/mmsA Streptococcus pneumoniae R36A

72.347

99.554

0.72
  recG Bacillus subtilis subsp. subtilis str. 168

48.733

99.851

0.487
  recG Neisseria meningitidis strain C311

40.337

97.024

0.391