Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   P4829_RS16195 Genome accession   NZ_CP120846
Coordinates   3197657..3197800 (-) Length   47 a.a.
NCBI ID   WP_003327149.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3192657..3202800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS16170 (P4829_16170) - 3192941..3193321 (-) 381 WP_010789785.1 hotdog fold thioesterase -
  P4829_RS16175 (P4829_16175) comA 3193339..3193980 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  P4829_RS16180 (P4829_16180) comP 3194061..3196370 (-) 2310 WP_063637893.1 histidine kinase Regulator
  P4829_RS16185 (P4829_16185) comX 3196386..3196607 (-) 222 WP_063637894.1 competence pheromone ComX -
  P4829_RS16190 (P4829_16190) - 3196604..3197473 (-) 870 WP_063638377.1 polyprenyl synthetase family protein -
  P4829_RS16195 (P4829_16195) degQ 3197657..3197800 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  P4829_RS16200 (P4829_16200) - 3198260..3198619 (+) 360 WP_063637895.1 hypothetical protein -
  P4829_RS16205 (P4829_16205) - 3198638..3199870 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  P4829_RS16210 (P4829_16210) - 3200008..3201474 (-) 1467 WP_155729092.1 nicotinate phosphoribosyltransferase -
  P4829_RS16215 (P4829_16215) - 3201490..3202041 (-) 552 WP_063637896.1 isochorismatase family cysteine hydrolase -
  P4829_RS16220 (P4829_16220) - 3202149..3202547 (-) 399 WP_063637897.1 YueI family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5645.61 Da        Isoelectric Point: 8.5787

>NTDB_id=808872 P4829_RS16195 WP_003327149.1 3197657..3197800(-) (degQ) [Bacillus atrophaeus strain MBLB1156]
MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYAMKIS

Nucleotide


Download         Length: 144 bp        

>NTDB_id=808872 P4829_RS16195 WP_003327149.1 3197657..3197800(-) (degQ) [Bacillus atrophaeus strain MBLB1156]
GTGGAAAAGAAAAAACTTGAAGAAGTGAAACAATTATTATTCCGACTCGAACTTGATATCAAAGAAACGACAGATTCATT
ACGAAACATTAACAAAAGCATTGATCAGCTCGATAAATTCACATATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

95.455

93.617

0.894