Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P4829_RS16175 Genome accession   NZ_CP120846
Coordinates   3193339..3193980 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188339..3198980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS16140 (P4829_16140) - 3189532..3189963 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  P4829_RS16145 (P4829_16145) - 3189963..3190304 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  P4829_RS16150 (P4829_16150) - 3190297..3191778 (+) 1482 WP_061669364.1 Na+/H+ antiporter subunit D -
  P4829_RS16155 (P4829_16155) - 3191784..3192260 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  P4829_RS16160 (P4829_16160) - 3192260..3192544 (+) 285 WP_010789784.1 Na(+)/H(+) antiporter subunit F1 -
  P4829_RS16165 (P4829_16165) mnhG 3192528..3192902 (+) 375 WP_003327156.1 monovalent cation/H(+) antiporter subunit G -
  P4829_RS16170 (P4829_16170) - 3192941..3193321 (-) 381 WP_010789785.1 hotdog fold thioesterase -
  P4829_RS16175 (P4829_16175) comA 3193339..3193980 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  P4829_RS16180 (P4829_16180) comP 3194061..3196370 (-) 2310 WP_063637893.1 histidine kinase Regulator
  P4829_RS16185 (P4829_16185) comX 3196386..3196607 (-) 222 WP_063637894.1 competence pheromone ComX -
  P4829_RS16190 (P4829_16190) - 3196604..3197473 (-) 870 WP_063638377.1 polyprenyl synthetase family protein -
  P4829_RS16195 (P4829_16195) degQ 3197657..3197800 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  P4829_RS16200 (P4829_16200) - 3198260..3198619 (+) 360 WP_063637895.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=808870 P4829_RS16175 WP_003327154.1 3193339..3193980(-) (comA) [Bacillus atrophaeus strain MBLB1156]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=808870 P4829_RS16175 WP_003327154.1 3193339..3193980(-) (comA) [Bacillus atrophaeus strain MBLB1156]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCAGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAGGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAATTGAATGTCGGTTCCCGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901