Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RPQ07_RS28125 Genome accession   NZ_CP135086
Coordinates   6317251..6319371 (+) Length   706 a.a.
NCBI ID   WP_313947000.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6312251..6324371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS28105 (RPQ07_28105) - 6313097..6314320 (-) 1224 WP_313949055.1 MFS transporter -
  RPQ07_RS28110 (RPQ07_28110) - 6314488..6315018 (-) 531 WP_313946997.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RPQ07_RS28115 (RPQ07_28115) - 6315076..6315966 (-) 891 WP_313946998.1 glycerophosphodiester phosphodiesterase -
  RPQ07_RS28120 (RPQ07_28120) - 6316260..6317129 (+) 870 WP_313946999.1 MHYT domain-containing protein -
  RPQ07_RS28125 (RPQ07_28125) uvrB 6317251..6319371 (+) 2121 WP_313947000.1 excinuclease ABC subunit UvrB Machinery gene
  RPQ07_RS28130 (RPQ07_28130) - 6319563..6320141 (+) 579 WP_096629140.1 TerD family protein -
  RPQ07_RS28135 (RPQ07_28135) - 6320248..6322203 (+) 1956 WP_313947001.1 TerD family protein -
  RPQ07_RS28140 (RPQ07_28140) - 6322427..6323425 (+) 999 WP_313947002.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 79381.07 Da        Isoelectric Point: 4.7712

>NTDB_id=808784 RPQ07_RS28125 WP_313947000.1 6317251..6319371(+) (uvrB) [Streptomyces sp. AM8-1-1]
MRPVSKIERTVAPFEVVSPFQPSGDQPAAIADLERRIRAGEDDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVQLKVGEEIDRDQLLRRFVDIQYTRNDAAFQRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISEDQSLYVFPATHYVAGPERMEKAVNGIEAELEQRLAELDKQGKLLESQRLRMRTTYDLEMMRQIGSCSGIENYSMH
FDDRGPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFKERTGQTVYL
SATPGAYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRLRTEKNERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMEKAIEETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREEVDTEQLLGTGYRQAKAEKPGKGAKAPVPA
LGGKAGRKGEVLSDRPAAELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMKEAGVA

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=808784 RPQ07_RS28125 WP_313947000.1 6317251..6319371(+) (uvrB) [Streptomyces sp. AM8-1-1]
ATGCGGCCCGTTTCCAAGATCGAACGTACGGTGGCGCCCTTCGAGGTCGTCAGTCCCTTCCAGCCCAGTGGCGACCAGCC
CGCGGCCATCGCCGACCTGGAGCGCCGTATCCGCGCGGGTGAGGACGATGTCGTGCTGCTCGGCGCGACCGGCACCGGCA
AGTCGGCGACGACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAAGAGGTCGAGCGGCTGCGCCACT
CCGCGACCAATTCGCTGCTCACCCGGCGTGACGTGATCGTCGTCGCCTCCGTCTCGTGCATCTACGGCCTCGGCACCCCG
CAGGAATACGTCGACCGCATGGTGCAGCTCAAGGTCGGCGAGGAGATCGACCGCGACCAGCTGCTGCGCCGTTTCGTCGA
CATCCAGTACACGCGCAACGACGCGGCGTTCCAGCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCGGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGAGGACCAGTCGCTCTACGTGTTCCCGGCGACCCACTACGTCGCGGGCCCCGAGCGCATGGAGAAGGC
GGTCAACGGCATCGAGGCGGAGCTGGAGCAGCGGCTGGCCGAGCTGGACAAGCAGGGCAAGCTCCTGGAGTCGCAGCGGC
TGCGGATGCGCACCACCTACGACCTCGAGATGATGCGCCAGATCGGCTCCTGCTCGGGCATCGAGAACTACTCGATGCAC
TTCGACGACCGCGGACCCGGCTCGCCGCCCAACACCCTTCTCGACTACTTCCCCGAGGACTTCCTCCTCGTGATCGACGA
GTCGCACGTCACCGTTCCGCAGATCGGCGCGATGTACGAGGGCGACGCGTCCCGTAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCCTCCGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCAAGGAGCGGACCGGCCAGACCGTGTATCTG
TCGGCCACCCCCGGTGCGTACGAACTCTCCCGCGGCGACGGATTCGTGGAGCAGATCATCCGCCCCACCGGACTCGTCGA
CCCGGAGGTCGTCGTCAAGCCGACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGGCTGCGCACCGAGAAGAACG
AACGGGTCCTCGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTCGAACTGGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTGCT
GGTCGGCATCAACCTCCTGCGGGAGGGCCTCGACCTCCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCATATGTAC
GCGGACAAGGTCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGATCGCCTACAACAC
CGAGCGGGGCATCGACCCCCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCCACCATCGCGCGCGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCACCGGCTACCGGCAGGCGAAGGCGGAGAAGCCGGGCAAGGGCGCCAAGGCCCCCGTCCCCGCG
CTCGGCGGCAAGGCGGGCAGGAAGGGCGAGGTGCTGAGCGACCGGCCCGCCGCCGAACTGGCCGGAATCATCGAGGAGAT
GACCGACCGGATGCGAGCGGCCGCCGCGGATCTGCAGTTCGAGGTGGCGGCCCGGCTGCGCGACGAGGTCGGCGAGTTGA
AGAAGGAGCTCCGTCAGATGAAGGAGGCGGGTGTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(24-145)

UvrB interaction domain (UvrB_inter)

(168-257)

Helicase conserved C-terminal domain (Helicase_C)

(448-551)

UvrB/uvrC motif (UVR)

(664-696)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.372

97.025

0.557
  uvrB Streptococcus pneumoniae R6

57.372

97.025

0.557
  uvrB Streptococcus pneumoniae D39

57.372

97.025

0.557