Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RPQ02_RS10710 Genome accession   NZ_CP135085
Coordinates   2364029..2366158 (-) Length   709 a.a.
NCBI ID   WP_313936736.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2359029..2371158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS10690 (RPQ02_10690) - 2359180..2359836 (+) 657 WP_313936733.1 MBL fold metallo-hydrolase -
  RPQ02_RS10695 (RPQ02_10695) - 2359886..2360887 (-) 1002 WP_313936734.1 TerC family protein -
  RPQ02_RS10700 (RPQ02_10700) - 2361141..2363117 (-) 1977 WP_313936735.1 TerD family protein -
  RPQ02_RS10705 (RPQ02_10705) - 2363318..2363896 (-) 579 WP_030919738.1 TerD family protein -
  RPQ02_RS10710 (RPQ02_10710) uvrB 2364029..2366158 (-) 2130 WP_313936736.1 excinuclease ABC subunit UvrB Machinery gene
  RPQ02_RS10715 (RPQ02_10715) - 2366199..2367089 (-) 891 WP_313936737.1 MHYT domain-containing protein -
  RPQ02_RS10720 (RPQ02_10720) - 2367305..2368264 (+) 960 WP_313936738.1 glycerophosphodiester phosphodiesterase -
  RPQ02_RS10725 (RPQ02_10725) - 2368322..2368888 (+) 567 WP_313936739.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RPQ02_RS10730 (RPQ02_10730) - 2368954..2370240 (+) 1287 WP_313936740.1 MFS transporter -
  RPQ02_RS10735 (RPQ02_10735) - 2370325..2370687 (-) 363 WP_313936741.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79765.63 Da        Isoelectric Point: 4.8610

>NTDB_id=808650 RPQ02_RS10710 WP_313936736.1 2364029..2366158(-) (uvrB) [Streptomyces sp. AM2-3-1]
MRPVSKIERSVAPFEVVSPYQPSGDQPAAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSSINDEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDQMLRRFVEIQYTRNDIAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDNELYVFPASHYVAGPERMEKAVNGIEQELEHRLAELEKQGKLLEAQRLRMRTTYDIEMMRQIGTCSGIENYSMH
MDGREPGTAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRSLVDHGFRLPSALDNRPLRWEEFVERIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTERDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAYNTERGLDPQPLRKKINDIVATIAREEIDTEELLGSGYRQAKGDKAPVPALGGKAG
KAAKAAGAKKAGAVVTDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=808650 RPQ02_RS10710 WP_313936736.1 2364029..2366158(-) (uvrB) [Streptomyces sp. AM2-3-1]
ATGCGGCCCGTTTCGAAGATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGATCAGCC
CGCGGCCATCGCCGAGCTGGAACGGCGCATCCGGGCAGGTGAGAAGGATGTCGTGCTGCTCGGCGCGACCGGTACCGGTA
AATCGGCTACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCGACCCTCGTGATGGCGCCGAACAAGACCCTCGCGGCC
CAGCTGGCGAACGAGTTCCGCGAACTGCTCCCGAACAACGCCGTCGAGTACTTCGTCTCCTACTACGACTACTACCAGCC
CGAGGCGTACATTCCGCAGTCGGACACGTACATCGAGAAGGATTCGTCGATCAACGACGAGGTCGAGCGGCTGCGGCACT
CCGCGACGAATTCGCTGCTCACCCGCCGTGACGTGGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGTACGCCA
CAGGAGTACGTGGACCGCATGGTCCCGCTCAAGGTGGGCGACGAGATCGACCGTGACCAGATGCTGCGCCGCTTCGTGGA
GATCCAGTACACCCGCAACGACATCGCGTTCACCCGGGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACCCTCCATCCACTCACCGGC
GAGGTCATCAGCGAGGACAACGAGCTCTATGTCTTCCCCGCCAGCCACTACGTGGCGGGACCCGAGCGCATGGAGAAGGC
GGTCAACGGCATCGAGCAGGAGCTGGAACACCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGATGCGCCAGATCGGCACCTGCTCCGGTATCGAGAACTATTCGATGCAC
ATGGACGGCCGCGAGCCCGGCACCGCCCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTGCTCGTCATCGACGA
GTCGCATGTCACCGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGCAGCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCCCTCGACAACCGCCCCCTGAGGTGGGAGGAGTTCGTGGAGCGGATCGGCCAGACCGTCTATCTC
TCCGCAACCCCGGGCAAGTACGAGCTGTCCCGCGGCGACGGGTTCGTGGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAGGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGTCCGAGGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGTTATCTGCACAGTGACGTCGACACGCTGCGCCGCATCGAGCTGCTGCGCGAACTGCGCTCCGGTGAGTACGACGTACT
GGTCGGGATCAACCTCCTGCGCGAGGGGCTCGACCTGCCCGAGGTGTCCCTGGTGGCCATCCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCCGGGACGTCCCTCATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGGGAGAAGCAGATCGCGTACAACAC
CGAGCGCGGCCTCGATCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGACGATCGCCCGCGAGGAGATCGACA
CCGAGGAGCTGCTCGGCTCCGGTTACCGTCAGGCGAAGGGCGACAAGGCACCGGTCCCCGCGCTCGGCGGGAAGGCGGGT
AAGGCGGCCAAGGCGGCCGGAGCCAAGAAGGCCGGCGCGGTGGTCACCGACCGGCCCGCGACCGAACTCGCCGGGATCAT
CGAGGAGATGACCGACCGGATGCGGGCAGCCGCCGCGGACCTGCAGTTCGAGGTGGCCGCCCGACTGCGCGACGAGGTCG
GCGAGCTGAAGAAGGAGCTGCGCCAGATGCGCGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-144)

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(667-699)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

Ultra-violet resistance protein B (UvrB)

(559-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.831

97.038

0.551
  uvrB Streptococcus pneumoniae R6

56.831

97.038

0.551
  uvrB Streptococcus pneumoniae D39

56.831

97.038

0.551