Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RMQ62_RS05415 Genome accession   NZ_CP135065
Coordinates   1110735..1111325 (-) Length   196 a.a.
NCBI ID   WP_024385072.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105735..1116325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS05385 (RMQ62_05385) ruvX 1105849..1106268 (-) 420 WP_313680570.1 Holliday junction resolvase RuvX -
  RMQ62_RS05390 (RMQ62_05390) - 1106268..1106534 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RMQ62_RS05395 (RMQ62_05395) spx 1106634..1107032 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  RMQ62_RS05400 (RMQ62_05400) recA 1107267..1108418 (-) 1152 WP_024388019.1 recombinase RecA Machinery gene
  RMQ62_RS05405 (RMQ62_05405) cinA 1108470..1109651 (-) 1182 WP_313680569.1 competence/damage-inducible protein A Machinery gene
  RMQ62_RS05410 (RMQ62_05410) - 1109688..1110257 (-) 570 WP_044673310.1 DNA-3-methyladenine glycosylase I -
  RMQ62_RS05415 (RMQ62_05415) ruvA 1110735..1111325 (-) 591 WP_024385072.1 Holliday junction branch migration protein RuvA Machinery gene
  RMQ62_RS05420 (RMQ62_05420) hexB 1111364..1113301 (-) 1938 WP_313680568.1 DNA mismatch repair endonuclease MutL Machinery gene
  RMQ62_RS05425 (RMQ62_05425) - 1113419..1114942 (-) 1524 WP_313680567.1 quinol oxidase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21671.01 Da        Isoelectric Point: 5.3292

>NTDB_id=808511 RMQ62_RS05415 WP_024385072.1 1110735..1111325(-) (ruvA) [Streptococcus suis strain ID24665]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVISEEAGPVQPTAPASENIALEEAMEAME
ALGYRPAELKKIKKFFDGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=808511 RMQ62_RS05415 WP_024385072.1 1110735..1111325(-) (ruvA) [Streptococcus suis strain ID24665]
ATGTACGACTATATCAAAGGAATTTTAACAAAAATCACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAACCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATCTGCTTTACGGATTTGCGACTGAGAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTCGATGATAATGATGGGCTTGTTCGTGCCATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTTATCA
GCGAAGAAGCTGGTCCTGTCCAACCAACAGCTCCTGCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCGCTCGGTTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTCGACGGCACCAACGACACCGCCGAAAACTACAT
CAAGTCAGCCCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408