Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RMQ63_RS08435 Genome accession   NZ_CP135063
Coordinates   1735388..1736071 (+) Length   227 a.a.
NCBI ID   WP_141587675.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1730388..1741071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS08415 (RMQ63_08415) - 1730472..1731983 (+) 1512 WP_313680676.1 ABC transporter permease/substrate-binding protein -
  RMQ63_RS08420 (RMQ63_08420) - 1731993..1732754 (+) 762 WP_313680677.1 nuclear transport factor 2 family protein -
  RMQ63_RS08425 (RMQ63_08425) - 1732899..1734023 (+) 1125 WP_313680678.1 aminotransferase -
  RMQ63_RS08430 (RMQ63_08430) - 1734037..1735218 (-) 1182 WP_313680679.1 DUF2974 domain-containing protein -
  RMQ63_RS08435 (RMQ63_08435) braR 1735388..1736071 (+) 684 WP_141587675.1 response regulator transcription factor Regulator
  RMQ63_RS08440 (RMQ63_08440) - 1736064..1737056 (+) 993 WP_313680680.1 sensor histidine kinase -
  RMQ63_RS08445 (RMQ63_08445) - 1737152..1737910 (+) 759 WP_313680681.1 ABC transporter ATP-binding protein -
  RMQ63_RS08450 (RMQ63_08450) - 1737912..1739915 (+) 2004 WP_313680682.1 FtsX-like permease family protein -
  RMQ63_RS08455 (RMQ63_08455) - 1740253..1740570 (+) 318 WP_024384973.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26522.78 Da        Isoelectric Point: 4.6826

>NTDB_id=808454 RMQ63_RS08435 WP_141587675.1 1735388..1736071(+) (braR) [Streptococcus suis strain ID32563]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLNLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=808454 RMQ63_RS08435 WP_141587675.1 1735388..1736071(+) (braR) [Streptococcus suis strain ID32563]
ATGCAGAAAATTCTTCTTATCGAGGACGATAAAACGATTAGCCAACTAGTTGCTAAAAATTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTAATTTTACTGGATATTG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTATCTTCC
CATGATCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTTTGCGGCGAACTTACGATTTTGTAGGTGAACAAAGTCTACTCTGGTTTGAGGAGA
TTTCTCTAAACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGATAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAAAAGTTGGCAGAACTGGGTCTGCCAGATGTGATTGCTA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

38.865

100

0.392
  micA Streptococcus pneumoniae Cp1015

36.245

100

0.366