Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RMQ63_RS08115 Genome accession   NZ_CP135063
Coordinates   1675547..1676191 (+) Length   214 a.a.
NCBI ID   WP_313680659.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1670547..1681191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS08105 (RMQ63_08105) - 1672486..1673895 (+) 1410 WP_313680658.1 LPXTG cell wall anchor domain-containing protein -
  RMQ63_RS08110 (RMQ63_08110) - 1674676..1675383 (-) 708 WP_029694000.1 CPBP family intramembrane glutamic endopeptidase -
  RMQ63_RS08115 (RMQ63_08115) scnR 1675547..1676191 (+) 645 WP_313680659.1 response regulator transcription factor Regulator
  RMQ63_RS08120 (RMQ63_08120) - 1676194..1677552 (+) 1359 WP_202846098.1 HAMP domain-containing sensor histidine kinase -
  RMQ63_RS08125 (RMQ63_08125) - 1677835..1678380 (+) 546 WP_313680660.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24560.68 Da        Isoelectric Point: 4.8919

>NTDB_id=808450 RMQ63_RS08115 WP_313680659.1 1675547..1676191(+) (scnR) [Streptococcus suis strain ID32563]
MAKIMVVEDDIVISQVVCEFLKDHGYEVPHISDGKIALETFREESFDLIVLDIMIPSMTGLEVLQEIRKTSKIPIIMLTA
MDDEYTQLVSFNQLISDYVVKPFSPIILVKRIENILRGEGDIIEAADIQIHPSSGAVYMAEEEVQLTKKEYEILLYLAKR
RGKIVNRDHLMLGIWGYTELDSRVLDNHIKNLRKKLPSLPLRTVIGRGYQVEEF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=808450 RMQ63_RS08115 WP_313680659.1 1675547..1676191(+) (scnR) [Streptococcus suis strain ID32563]
ATGGCGAAAATTATGGTTGTAGAAGATGATATTGTTATCAGTCAAGTAGTTTGTGAATTTCTAAAGGATCACGGCTATGA
AGTGCCCCATATTTCCGACGGAAAAATTGCACTTGAAACATTTCGAGAAGAATCATTTGATTTGATTGTATTGGACATTA
TGATTCCGTCCATGACAGGATTGGAAGTCCTACAGGAGATTCGTAAGACATCAAAAATTCCAATTATTATGTTAACGGCA
ATGGATGACGAATACACACAATTGGTTAGTTTCAATCAACTGATTAGTGACTACGTTGTAAAACCTTTTTCGCCGATTAT
TCTTGTGAAACGCATTGAAAATATTTTGCGTGGTGAAGGTGATATTATAGAAGCAGCCGACATCCAAATCCATCCGTCCA
GTGGAGCGGTTTATATGGCAGAAGAAGAAGTACAATTAACGAAAAAAGAATACGAAATTTTACTGTACTTGGCAAAACGA
CGTGGAAAAATTGTCAATCGTGATCATCTAATGCTGGGAATTTGGGGCTATACAGAACTGGATAGCCGAGTTTTAGACAA
TCATATCAAGAATCTACGTAAGAAGTTACCATCTCTTCCTTTACGAACGGTAATTGGTCGAGGTTATCAGGTTGAGGAAT
TCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(142-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.393
  micA Streptococcus pneumoniae Cp1015

36.842

100

0.393
  vicR Streptococcus mutans UA159

35.897

100

0.393