Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   P3T49_RS16190 Genome accession   NZ_CP120723
Coordinates   3196435..3196578 (-) Length   47 a.a.
NCBI ID   WP_003327149.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3191435..3201578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS16165 - 3191786..3192166 (-) 381 WP_199679676.1 hotdog fold thioesterase -
  P3T49_RS16170 comA 3192184..3192825 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  P3T49_RS16175 comP 3192906..3195203 (-) 2298 WP_277713830.1 histidine kinase Regulator
  P3T49_RS16180 comX 3195214..3195378 (-) 165 WP_106046982.1 competence pheromone ComX -
  P3T49_RS16185 - 3195391..3196251 (-) 861 WP_216412504.1 polyprenyl synthetase family protein -
  P3T49_RS16190 degQ 3196435..3196578 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  P3T49_RS16195 - 3197038..3197397 (+) 360 WP_063637895.1 hypothetical protein -
  P3T49_RS16200 - 3197416..3198648 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  P3T49_RS16205 - 3198786..3200252 (-) 1467 WP_106046983.1 nicotinate phosphoribosyltransferase -
  P3T49_RS16210 - 3200268..3200819 (-) 552 WP_063637896.1 cysteine hydrolase family protein -
  P3T49_RS16215 - 3200927..3201325 (-) 399 WP_003327144.1 YueI family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5645.61 Da        Isoelectric Point: 8.5787

>NTDB_id=808388 P3T49_RS16190 WP_003327149.1 3196435..3196578(-) (degQ) [Bacillus atrophaeus strain NX-12]
MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYAMKIS

Nucleotide


Download         Length: 144 bp        

>NTDB_id=808388 P3T49_RS16190 WP_003327149.1 3196435..3196578(-) (degQ) [Bacillus atrophaeus strain NX-12]
GTGGAAAAGAAAAAACTTGAAGAAGTGAAACAATTATTATTCCGACTCGAACTTGATATCAAAGAAACGACAGATTCATT
ACGAAACATTAACAAAAGCATTGATCAGCTCGATAAATTCACATATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

95.455

93.617

0.894