Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P3T49_RS16170 Genome accession   NZ_CP120723
Coordinates   3192184..3192825 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3187184..3197825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS16135 - 3188377..3188808 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  P3T49_RS16140 - 3188808..3189149 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  P3T49_RS16145 - 3189142..3190623 (+) 1482 WP_277713828.1 Na+/H+ antiporter subunit D -
  P3T49_RS16150 - 3190629..3191105 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  P3T49_RS16155 - 3191105..3191389 (+) 285 WP_061570549.1 Na(+)/H(+) antiporter subunit F1 -
  P3T49_RS16160 mnhG 3191373..3191747 (+) 375 WP_061570550.1 monovalent cation/H(+) antiporter subunit G -
  P3T49_RS16165 - 3191786..3192166 (-) 381 WP_199679676.1 hotdog fold thioesterase -
  P3T49_RS16170 comA 3192184..3192825 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  P3T49_RS16175 comP 3192906..3195203 (-) 2298 WP_277713830.1 histidine kinase Regulator
  P3T49_RS16180 comX 3195214..3195378 (-) 165 WP_106046982.1 competence pheromone ComX -
  P3T49_RS16185 - 3195391..3196251 (-) 861 WP_216412504.1 polyprenyl synthetase family protein -
  P3T49_RS16190 degQ 3196435..3196578 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  P3T49_RS16195 - 3197038..3197397 (+) 360 WP_063637895.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=808386 P3T49_RS16170 WP_003327154.1 3192184..3192825(-) (comA) [Bacillus atrophaeus strain NX-12]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=808386 P3T49_RS16170 WP_003327154.1 3192184..3192825(-) (comA) [Bacillus atrophaeus strain NX-12]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGAGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAATTGAATGTCGGTTCCCGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901