Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P3T49_RS02560 Genome accession   NZ_CP120723
Coordinates   498030..498980 (+) Length   316 a.a.
NCBI ID   WP_010789705.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 493030..503980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS02535 rapC 494324..495472 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  P3T49_RS02540 phrC 495456..495575 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  P3T49_RS02545 - 495709..495816 (-) 108 WP_106273028.1 YjcZ family sporulation protein -
  P3T49_RS02550 - 496020..496103 (-) 84 WP_370499808.1 YjcZ family sporulation protein -
  P3T49_RS02555 - 496234..497598 (-) 1365 WP_277714329.1 aspartate kinase -
  P3T49_RS02560 ceuB 498030..498980 (+) 951 WP_010789705.1 ABC transporter permease Machinery gene
  P3T49_RS02565 - 498973..499920 (+) 948 WP_106045687.1 iron chelate uptake ABC transporter family permease subunit -
  P3T49_RS02570 - 499914..500672 (+) 759 WP_063638742.1 ABC transporter ATP-binding protein -
  P3T49_RS02575 - 500694..501647 (+) 954 WP_004430274.1 siderophore ABC transporter substrate-binding protein -
  P3T49_RS02580 - 501956..503374 (-) 1419 WP_088116508.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34967.50 Da        Isoelectric Point: 9.8731

>NTDB_id=808335 P3T49_RS02560 WP_010789705.1 498030..498980(+) (ceuB) [Bacillus atrophaeus strain NX-12]
MKLRYLVVLLILLAFCSIFIGVEDLSPLDLFHMNKEEASTLFASRLPRLISIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLIKMLIAFIFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNISSWLQGDFSLIVKGRYELLFLSIPLVIIAYVFADKFTVAGMGESFSVNLGLKYKRIVNIGLIISSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLLCDILGRIIIFPYEISIGLMVGIIGSGIFLYMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=808335 P3T49_RS02560 WP_010789705.1 498030..498980(+) (ceuB) [Bacillus atrophaeus strain NX-12]
ATGAAGCTACGTTACTTAGTTGTTTTACTTATTTTACTTGCATTCTGTTCTATTTTTATCGGCGTAGAGGATCTGTCGCC
GCTGGATCTTTTTCATATGAATAAAGAAGAGGCTTCAACGCTTTTCGCCAGCCGTTTACCGAGATTAATCAGCATTATTA
TTGCAGGCATGAGCCTGAGCATCTGCGGTTTAATTATGCAGCAGATCAGCCGGAATAAATTCGTTTCGCCGACAACTGCC
GGCACGATGGATTGGGCGAGGCTCGGGATTTTGATTTCATTAATGCTGTTTACCTCTGCCAGTCCGCTGATAAAAATGCT
GATTGCTTTTATATTTGCGCTTGCGGGCAACTTCCTGTTCATGAAAATCCTTGAGAGAATAAAGTTTAATGATACGATCT
TTATTCCTCTCGTGGGCTTAATGCTTGGGAACATTGTCAGCTCGATTGCGACGTTTATCGCGTATAAATATGATTTAATC
CAAAATATTTCTTCATGGCTTCAAGGAGACTTCTCTCTCATTGTGAAAGGGAGATATGAACTTTTATTCTTGAGTATCCC
GCTTGTGATAATCGCATATGTATTTGCTGACAAATTCACAGTAGCAGGGATGGGGGAAAGCTTCTCCGTCAACCTTGGCC
TGAAATATAAACGGATTGTGAATATCGGGCTGATTATATCGTCGCTGATCACGTCCCTCGTGATTTTGACTGTCGGTATG
CTGCCGTTCCTTGGGCTAATCATTCCGAATATCGTATCCATTTACAGGGGAGACAACCTGAAAAGCAGCCTGCCCCACAC
AGCTCTTTTAGGTGCCGTTTTTGTGCTGCTTTGCGATATATTGGGCAGGATTATTATTTTTCCGTACGAAATCTCGATTG
GCTTGATGGTCGGAATCATCGGCAGCGGTATTTTCCTGTATATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525