Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   P3T49_RS02540 Genome accession   NZ_CP120723
Coordinates   495456..495575 (+) Length   39 a.a.
NCBI ID   WP_004430266.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 490456..500575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS02525 - 492036..492722 (+) 687 WP_106045683.1 response regulator transcription factor -
  P3T49_RS02530 - 492709..494130 (+) 1422 WP_277714328.1 sensor histidine kinase -
  P3T49_RS02535 rapC 494324..495472 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  P3T49_RS02540 phrC 495456..495575 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  P3T49_RS02545 - 495709..495816 (-) 108 WP_106273028.1 YjcZ family sporulation protein -
  P3T49_RS02550 - 496020..496103 (-) 84 WP_370499808.1 YjcZ family sporulation protein -
  P3T49_RS02555 - 496234..497598 (-) 1365 WP_277714329.1 aspartate kinase -
  P3T49_RS02560 ceuB 498030..498980 (+) 951 WP_010789705.1 ABC transporter permease Machinery gene
  P3T49_RS02565 - 498973..499920 (+) 948 WP_106045687.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4111.89 Da        Isoelectric Point: 7.9858

>NTDB_id=808334 P3T49_RS02540 WP_004430266.1 495456..495575(+) (phrC) [Bacillus atrophaeus strain NX-12]
MKLKSKLLIICLAAAAVFATVGVSNAEAPDYQVTERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=808334 P3T49_RS02540 WP_004430266.1 495456..495575(+) (phrC) [Bacillus atrophaeus strain NX-12]
ATGAAATTGAAATCTAAATTGCTCATTATTTGTTTGGCTGCAGCTGCTGTGTTTGCAACAGTTGGAGTGTCCAATGCTGA
AGCGCCTGATTATCAGGTGACAGAAAGAGGAATGACGTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

75

100

0.769