Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TSUB_RS02315 Genome accession   NZ_AP023054
Coordinates   474382..475629 (-) Length   415 a.a.
NCBI ID   WP_087016583.1    Uniprot ID   -
Organism   Thaumasiovibrio subtropicus strain C4V358     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469382..480629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSUB_RS02290 mutT 471262..471663 (+) 402 WP_414718361.1 8-oxo-dGTP diphosphatase MutT -
  TSUB_RS02295 yacG 471756..471953 (-) 198 WP_087016591.1 DNA gyrase inhibitor YacG -
  TSUB_RS02300 zapD 471994..472764 (-) 771 WP_087016589.1 cell division protein ZapD -
  TSUB_RS02305 coaE 472828..473433 (-) 606 WP_087016587.1 dephospho-CoA kinase -
  TSUB_RS02310 pilD 473434..474303 (-) 870 WP_087016585.1 prepilin peptidase Machinery gene
  TSUB_RS02315 pilC 474382..475629 (-) 1248 WP_087016583.1 type II secretion system F family protein Machinery gene
  TSUB_RS02320 pilB 475662..477353 (-) 1692 WP_087016581.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TSUB_RS02325 pilA 477353..477820 (-) 468 WP_087016579.1 pilin Machinery gene
  TSUB_RS02330 nadC 478230..479123 (-) 894 WP_087016577.1 carboxylating nicotinate-nucleotide diphosphorylase -
  TSUB_RS02335 ampD 479287..479826 (+) 540 WP_087016575.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45434.11 Da        Isoelectric Point: 9.7900

>NTDB_id=80831 TSUB_RS02315 WP_087016583.1 474382..475629(-) (pilC) [Thaumasiovibrio subtropicus strain C4V358]
MFGSNSEALTSSSNKLKHFAWRGVNSNGKKVRGVMMGYIEGDVREKLAQQHIQPQKIKTTTPSFFSSLGNKMNGSDVTAF
TRQLATMLHSGVPVVQALKLIADSHKKAEMRATVLQVSKQVEAGMSLSKAFSSASAKFDNFYCDLISTGEETGHLPEVFS
RLAMYREKSEALRKKVVKAMIYPTIVSIVAIAVTVGMLIFVIPQFDQIFKSFNAQLPWFTQQVVDLSNLLQSTGGVITVS
IVLFVLAFNIALRKSDSFRYQVHKFSLKIPIFGNVILKATIAKFARTLATTFSAGIPLLSGLQSGAQTTTNLHLKTAIED
AHKQTAAGMPLYIALRQTEVFPELMLQMVMIGEESGALDDMLNKNAALYEDDVDNVVDNLSQIMEPFIIVILGGLIGGLL
VAMYMPIFSLMSVVG

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=80831 TSUB_RS02315 WP_087016583.1 474382..475629(-) (pilC) [Thaumasiovibrio subtropicus strain C4V358]
ATGTTTGGTTCCAACTCAGAGGCATTAACCTCATCAAGTAATAAACTAAAGCATTTCGCGTGGCGTGGCGTAAACAGCAA
CGGCAAAAAAGTCCGCGGTGTCATGATGGGTTACATTGAAGGCGATGTAAGAGAAAAGCTCGCCCAACAGCATATTCAAC
CGCAAAAAATCAAAACTACGACCCCATCTTTCTTCTCTTCCTTAGGGAATAAAATGAATGGAAGTGATGTTACTGCTTTC
ACTCGTCAATTAGCGACTATGCTCCACTCAGGTGTTCCAGTAGTTCAAGCACTCAAGTTGATCGCGGATAGCCACAAAAA
AGCCGAGATGCGCGCTACCGTTTTACAAGTTTCCAAACAGGTAGAAGCAGGTATGAGCCTATCAAAGGCATTTTCATCTG
CTAGCGCTAAGTTTGATAATTTTTATTGTGACCTAATTTCAACTGGCGAAGAAACTGGCCATTTACCAGAAGTATTTAGT
CGCTTAGCTATGTACCGTGAGAAAAGTGAAGCACTAAGAAAAAAAGTCGTCAAAGCTATGATATACCCTACTATCGTCAG
TATTGTCGCTATTGCTGTTACCGTAGGCATGTTGATTTTTGTTATTCCACAATTTGACCAAATCTTCAAAAGCTTTAACG
CACAATTACCATGGTTCACTCAACAAGTAGTAGACCTATCTAATCTCCTCCAGTCCACAGGCGGCGTTATTACGGTTAGC
ATAGTCCTGTTTGTATTAGCATTTAACATAGCTCTGAGAAAAAGTGATTCATTTAGATATCAAGTGCATAAATTTAGTCT
TAAAATCCCTATATTTGGCAATGTAATCCTTAAAGCTACAATAGCTAAGTTTGCTCGCACTCTTGCCACCACTTTTAGCG
CTGGCATACCACTACTTTCAGGCCTCCAATCTGGCGCGCAAACAACCACAAACCTCCATCTAAAAACTGCTATTGAAGAT
GCCCACAAGCAGACGGCTGCAGGTATGCCGCTTTATATCGCCTTAAGACAAACAGAAGTTTTTCCTGAACTAATGCTGCA
GATGGTTATGATTGGCGAAGAGTCAGGCGCCTTAGATGATATGCTCAACAAAAATGCTGCACTCTATGAAGATGATGTTG
ATAACGTTGTCGATAATTTAAGTCAAATCATGGAGCCATTTATTATCGTTATACTAGGCGGATTAATCGGAGGGCTACTT
GTAGCTATGTATATGCCAATATTCAGCCTAATGAGTGTAGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(80-203)

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.5

96.386

0.535
  pilC Vibrio campbellii strain DS40M4

54.613

96.627

0.528
  pilG Neisseria gonorrhoeae MS11

41.687

97.108

0.405
  pilC Pseudomonas stutzeri DSM 10701

42.172

95.422

0.402
  pilG Neisseria meningitidis 44/76-A

41.439

97.108

0.402
  pilC Acinetobacter baumannii D1279779

42.065

95.663

0.402
  pilC Acinetobacter baylyi ADP1

41.814

95.663

0.4
  pilC Legionella pneumophila strain ERS1305867

37.931

97.831

0.371

Multiple sequence alignment