Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   P6988_RS01500 Genome accession   NZ_CP120719
Coordinates   297021..297653 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio coralliilyticus strain Rb102     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 292021..302653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS01475 (P6988_01475) - 292687..294609 (+) 1923 WP_277684468.1 ABC transporter ATP-binding protein -
  P6988_RS01480 (P6988_01480) - 294606..295082 (+) 477 WP_019276785.1 TIGR02444 family protein -
  P6988_RS01485 (P6988_01485) - 295094..296071 (+) 978 WP_019276786.1 hydrolase -
  P6988_RS01490 (P6988_01490) - 296111..296323 (+) 213 WP_038513784.1 YheU family protein -
  P6988_RS26610 - 296411..296641 (+) 231 Protein_272 phosphoribulokinase -
  P6988_RS01500 (P6988_01500) crp 297021..297653 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  P6988_RS01505 (P6988_01505) - 297781..298572 (-) 792 WP_277684469.1 DUF1338 domain-containing protein -
  P6988_RS01510 (P6988_01510) astD 298751..300208 (-) 1458 WP_277684470.1 succinylglutamate-semialdehyde dehydrogenase -
  P6988_RS01515 (P6988_01515) astA 300226..301245 (-) 1020 WP_006963238.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=808288 P6988_RS01500 WP_004410522.1 297021..297653(+) (crp) [Vibrio coralliilyticus strain Rb102]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=808288 P6988_RS01500 WP_004410522.1 297021..297653(+) (crp) [Vibrio coralliilyticus strain Rb102]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCGTCAAA
AAGCACGCTGATCCACGCGGGCGAAAAAGCAGAGACTCTTTACTACATTGTTAAAGGTTCTGTTGCAGTACTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTTTATTCGAAGAAGAC
CAAGAGCGTACGGCATGGGTTCGTGCGAAATCTCCTTGTGAAGTAGCAGAAATTTCATTCAAGAAATTCCGTCAGCTAAT
CCAAGTAAACCCTGACATCCTAATGCGCCTGTCTGCACAAATGGCAAGCCGTCTACAGGTAACCAGTCAGAAAGTGGGTG
ACTTGGCATTCCTAGACGTAACAGGCCGCATCGCGCAAACACTGCTTAACCTAGCAAAACAGCCAGATGCAATGACGCAC
CCAGACGGCATGCAGATCAAGATCACTCGTCAGGAAATCGGTCAGATTGTTGGCTGTTCTCGTGAAACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCCCACGGTAAGACAATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467