Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RKE30_RS30600 Genome accession   NZ_CP134875
Coordinates   7027799..7029946 (-) Length   715 a.a.
NCBI ID   WP_313747536.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7022799..7034946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS30585 (RKE30_30585) - 7023719..7024717 (-) 999 WP_313747533.1 TerC family protein -
  RKE30_RS30590 (RKE30_30590) - 7024938..7027004 (-) 2067 WP_313747534.1 TerD family protein -
  RKE30_RS30595 (RKE30_30595) - 7027055..7027633 (-) 579 WP_313747535.1 TerD family protein -
  RKE30_RS30600 (RKE30_30600) uvrB 7027799..7029946 (-) 2148 WP_313747536.1 excinuclease ABC subunit UvrB Machinery gene
  RKE30_RS30605 (RKE30_30605) - 7029987..7030859 (-) 873 WP_313747537.1 MHYT domain-containing protein -
  RKE30_RS30610 (RKE30_30610) - 7031138..7032010 (+) 873 WP_313747538.1 glycerophosphodiester phosphodiesterase family protein -
  RKE30_RS30615 (RKE30_30615) - 7032113..7032676 (+) 564 WP_313747539.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RKE30_RS30620 (RKE30_30620) - 7032708..7033136 (-) 429 WP_313747540.1 VOC family protein -
  RKE30_RS30625 (RKE30_30625) - 7033236..7034141 (+) 906 WP_313747541.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 80639.53 Da        Isoelectric Point: 4.9309

>NTDB_id=808258 RKE30_RS30600 WP_313747536.1 7027799..7029946(-) (uvrB) [Streptomyces sp. Li-HN-5-11]
MRPVSHIERTVAPFEVVSPYQPSGDQPQAIAELARRIEAGERDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGDEIDRDEMLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPITG
EIISDDQQLYVFPASHYVAGPERMERAINDIEKELGERLAELEKQGKLLEAQRLRMRTTYDVEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFVLVIDESHNTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRADGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMERAIEETNRRREKQIAYNTARGIDPQPLRKKINDIVAQIAREEVDTEQLLGSGYRKLKDGKGAKTPVPKLGD
KAAKAAKPAKSAKGKAKETVPTDRPAAQLAEQIEEMTERMRAAAADLQFEVAARLRDEVAEMKKELRQMREAGLA

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=808258 RKE30_RS30600 WP_313747536.1 7027799..7029946(-) (uvrB) [Streptomyces sp. Li-HN-5-11]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GCAGGCCATCGCCGAGCTCGCCCGGCGCATCGAGGCAGGTGAGAGGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCGACTCTCGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTGCTCCCCAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCAGGGTCGGCGACGAGATCGACCGCGACGAGATGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACGTGGCCTTCACCCGCGGCACGTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTGCACCCGATCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTGTTCCCGGCTTCCCACTACGTCGCCGGCCCCGAGCGCATGGAGCGGGC
CATCAACGACATCGAGAAGGAGCTCGGCGAGCGCCTGGCCGAACTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TGCGCATGCGGACGACGTACGACGTCGAGATGCTGCGCCAGATCGGCTCCTGCTCGGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGTTCTCCCGGCTCCCCGCCGAACACCCTGCTCGACTATTTCCCGGACGACTTCGTGCTCGTCATCGACGA
GTCGCACAACACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTAGACCACGGCT
TCCGCCTGCCCTCCGCCCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGGCAGACGGTCTATTTG
TCGGCGACCCCCGGCAAGTACGAACTCTCCCGCGCGGACGGCGTCGTGGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAACCCACCGAGGGCCAGATCGACGACCTCGTGCACGAGATCCGCACACGGGTGGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTCGAGCTGGGCATCCAGGTG
CGGTACCTGCACAGCGACGTCGACACGCTGCGCCGCGTCGAGCTGCTGCGGGAACTGCGCAGCGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTCCTGCGCGAGGGCCTCGACCTTCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCGGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCGCTCATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAGGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGATCGCCTACAACAC
GGCGCGCGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCTCCGGCTACCGCAAGCTGAAGGACGGCAAGGGCGCCAAGACCCCGGTGCCGAAGCTCGGCGAC
AAGGCGGCGAAGGCGGCCAAGCCCGCCAAGTCCGCCAAGGGCAAGGCCAAGGAGACGGTGCCGACCGACCGTCCCGCGGC
CCAGCTCGCCGAGCAGATCGAGGAGATGACGGAGCGGATGCGGGCCGCGGCGGCCGACCTTCAGTTCGAGGTGGCGGCCC
GGCTGCGCGACGAGGTCGCCGAGATGAAGAAGGAACTGCGTCAGATGCGCGAGGCCGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

UvrB/uvrC motif (UVR)

(671-704)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.204

98.042

0.561
  uvrB Streptococcus pneumoniae R6

57.204

98.042

0.561
  uvrB Streptococcus pneumoniae D39

57.204

98.042

0.561