Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P0M29_RS10250 Genome accession   NZ_CP120711
Coordinates   2008350..2009039 (-) Length   229 a.a.
NCBI ID   WP_103042074.1    Uniprot ID   -
Organism   Bacillus velezensis strain 12Y     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2003350..2014039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M29_RS10215 (P0M29_10215) - 2003548..2004030 (-) 483 WP_003151394.1 flagellar protein FlgN -
  P0M29_RS10220 (P0M29_10220) flgM 2004045..2004311 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  P0M29_RS10225 (P0M29_10225) - 2004381..2004800 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  P0M29_RS10230 (P0M29_10230) comFC 2004874..2005563 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  P0M29_RS10235 (P0M29_10235) - 2005569..2005853 (-) 285 WP_003151389.1 competence protein ComFB -
  P0M29_RS10240 (P0M29_10240) comFA 2005911..2007296 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  P0M29_RS10245 (P0M29_10245) - 2007404..2008252 (-) 849 WP_003151387.1 DegV family protein -
  P0M29_RS10250 (P0M29_10250) degU 2008350..2009039 (-) 690 WP_103042074.1 two-component system response regulator DegU Regulator
  P0M29_RS10255 (P0M29_10255) degS 2009116..2010279 (-) 1164 WP_103042075.1 two-component sensor histidine kinase DegS Regulator
  P0M29_RS10260 (P0M29_10260) - 2010502..2011149 (+) 648 WP_007614107.1 YigZ family protein -
  P0M29_RS10265 (P0M29_10265) - 2011154..2012368 (+) 1215 WP_014419013.1 LCP family protein -
  P0M29_RS10270 (P0M29_10270) - 2012467..2013543 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25865.59 Da        Isoelectric Point: 6.1196

>NTDB_id=808177 P0M29_RS10250 WP_103042074.1 2008350..2009039(-) (degU) [Bacillus velezensis strain 12Y]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMNADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=808177 P0M29_RS10250 WP_103042074.1 2008350..2009039(-) (degU) [Bacillus velezensis strain 12Y]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGAACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996