Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RMO93_RS15780 Genome accession   NZ_CP134805
Coordinates   3255529..3256158 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain E7-1N7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250529..3261158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMO93_RS15765 (RMO93_15765) helD 3250771..3252825 (-) 2055 WP_311819853.1 DNA helicase IV -
  RMO93_RS15770 (RMO93_15770) yccF 3252948..3253394 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RMO93_RS15775 (RMO93_15775) yccS 3253404..3255566 (+) 2163 WP_311819854.1 YccS family putative transporter -
  RMO93_RS15780 (RMO93_15780) sxy/tfoX 3255529..3256158 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RMO93_RS15785 (RMO93_15785) sulA 3256376..3256885 (+) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  RMO93_RS15790 (RMO93_15790) ompA 3257241..3258281 (+) 1041 WP_001313715.1 porin OmpA -
  RMO93_RS15795 (RMO93_15795) matP 3258360..3258812 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RMO93_RS15800 (RMO93_15800) ycbZ 3258998..3260758 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=808161 RMO93_RS15780 WP_000839153.1 3255529..3256158(-) (sxy/tfoX) [Escherichia coli strain E7-1N7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=808161 RMO93_RS15780 WP_000839153.1 3255529..3256158(-) (sxy/tfoX) [Escherichia coli strain E7-1N7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCTGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1