Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   RI132_RS10175 Genome accession   NZ_CP134783
Coordinates   2190451..2192700 (-) Length   749 a.a.
NCBI ID   WP_130190795.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2185451..2197700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS10150 (RI132_10150) - 2185785..2186573 (-) 789 WP_011079975.1 diguanylate cyclase -
  RI132_RS10155 (RI132_10155) kdsB 2186745..2187500 (-) 756 WP_011150831.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RI132_RS10160 (RI132_10160) - 2187500..2187679 (-) 180 WP_011079973.1 Trm112 family protein -
  RI132_RS10165 (RI132_10165) lpxK 2187660..2188667 (-) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  RI132_RS10170 (RI132_10170) msbA 2188667..2190418 (-) 1752 WP_130190796.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  RI132_RS10175 (RI132_10175) comEC 2190451..2192700 (-) 2250 WP_130190795.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RI132_RS10180 (RI132_10180) - 2192709..2193218 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  RI132_RS10185 (RI132_10185) lolE 2193404..2194648 (-) 1245 WP_011150837.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  RI132_RS10190 (RI132_10190) lolD 2194660..2195343 (-) 684 WP_103200197.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RI132_RS10195 (RI132_10195) lolC 2195336..2196541 (-) 1206 WP_130190794.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  RI132_RS10200 (RI132_10200) - 2196807..2197376 (+) 570 WP_011079965.1 hypothetical protein -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 84083.20 Da        Isoelectric Point: 8.6140

>NTDB_id=807899 RI132_RS10175 WP_130190795.1 2190451..2192700(-) (comEC) [Vibrio vulnificus strain GCU-01]
MTLLGNNWLLASFSATLISASYWPLMPSWPWLMLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGE
NITINGAVDSPFKQISHGYEGVVSITAINNSHLVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAV
SQGIVGRATIDDSRSWRLVSVKGGRQALLEKAQQLLVRSDHTGYLLGLSFGIRDDITNEQWQQLKQGGLIHLLSISGLHI
GMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSLSWSYAWLAGFTLPTQRAIVCVTLVALFSFTSGQVGRWTVLLLALAFCL
AMSPFSALSTSLWLSFLAVSCVFLVVDLRESSSSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFS
LVVVPVIFVALVLTALDMMPVASMLWQLADLSLWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHVIRWQLSAVLI
ILLSTSSLLIHPLSRTRIDVLDVGHGLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDH
TGGLPYLQQNMRPQWVRSSHYLSDFPCVRGHDFEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDAL
AEWILIRDPEQLNSNVVLVPHHGSQTSSIEPFVNAVQADVAIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITL
YVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=807899 RI132_RS10175 WP_130190795.1 2190451..2192700(-) (comEC) [Vibrio vulnificus strain GCU-01]
ATGACTCTCTTAGGTAACAATTGGTTATTGGCTTCTTTTTCAGCAACCCTTATTTCGGCAAGCTACTGGCCGCTTATGCC
TTCCTGGCCTTGGTTAATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGG
TGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAG
AATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGC
AATAAATAATAGTCATTTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATC
AAATCGTAGCGCATGTTACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTC
AGCCAAGGTATCGTTGGACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTTTCCGTGAAGGGAGGGCGACAAGC
GCTGCTCGAAAAAGCTCAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTATTCGCG
ACGACATTACCAACGAGCAATGGCAGCAACTCAAGCAAGGTGGTTTGATACATCTGCTTTCTATCTCAGGGCTGCACATT
GGTATGGCTTTTGGTATCGGTTATTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGC
TATTGGACTGAGTCTCAGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTGTGTCA
CGTTAGTCGCCTTGTTCTCGTTTACGTCGGGGCAAGTCGGTCGCTGGACAGTCTTGCTGTTGGCACTGGCCTTCTGTCTT
GCGATGTCGCCATTTTCTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGA
TCTCCGTGAGTCGTCTTCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCG
CACCTGTGACTGCTTACTTCTTTTCCGGTTTGAGTCTGGCCGCCTGGCTGTATAACTTCCTGTTTATTCCATGGTTTAGT
TTGGTGGTGGTGCCTGTTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATGCTGTGGCA
GTTAGCGGATTTAAGTTTATGGCCATTAACTTACGCTATGCCTTACGCCCATTTAGGTTGGTGGGGGCTGTCTTCTTTTC
AGGTGGTGTTGGTCGCGTTGTGCGCGCTCGCTGTGATGCTGAGACATGTTATTCGCTGGCAACTCTCTGCTGTTCTGATC
ATTTTGCTCAGCACTTCTTCACTGTTGATTCATCCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCT
CGCCGTATTGATTGAGAAAGACGGTAAAACGCTGCTTTATGACACTGGAAAGTCTTGGCATGGTGGCAGTATTGCACAGC
AAGTGATTGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTTATCATCAGTCATCAAGATGACGATCAT
ACAGGCGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCTTG
TGTTAGAGGTCACGACTTTGAGTGGCAAGGGCTCAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACA
ATCCCCACTCCTGTGTGATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTG
GCTGAGTGGATCCTGATTCGTGATCCTGAACAGCTAAACAGCAATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTC
GTCGATTGAGCCTTTTGTGAACGCCGTCCAGGCAGATGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGC
CACAACCGCAAGTGGTCGAGACTTATCGACGACATCGCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTG
TATGTGGAACAGAGAAACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCA
AGTAGAATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-684)

Competence protein (Competence)

(208-467)

Domain of unknown function (DUF4131) (DUF4131)

(27-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

45.491

100

0.458
  comEC Vibrio campbellii strain DS40M4

44.695

100

0.45
  comEC Vibrio cholerae strain A1552

43.974

100

0.443