Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RI132_RS05225 Genome accession   NZ_CP134783
Coordinates   1119356..1121386 (+) Length   676 a.a.
NCBI ID   WP_011080893.1    Uniprot ID   Q7MM80
Organism   Vibrio vulnificus strain GCU-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114356..1126386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS05200 (RI132_05200) rsxC 1114745..1117285 (-) 2541 WP_130191358.1 electron transport complex subunit RsxC -
  RI132_RS05205 (RI132_05205) rsxB 1117298..1117894 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  RI132_RS05210 (RI132_05210) rsxA 1117896..1118474 (-) 579 WP_011080895.1 electron transport complex subunit RsxA -
  RI132_RS05220 (RI132_05220) - 1119072..1119257 (+) 186 WP_011080894.1 hypothetical protein -
  RI132_RS05225 (RI132_05225) uvrB 1119356..1121386 (+) 2031 WP_011080893.1 excinuclease ABC subunit UvrB Machinery gene
  RI132_RS05230 (RI132_05230) luxO 1121660..1123060 (+) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RI132_RS05235 (RI132_05235) luxU 1123060..1123407 (+) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  RI132_RS05240 (RI132_05240) - 1123508..1124398 (-) 891 WP_011080890.1 YvcK family protein -
  RI132_RS05245 (RI132_05245) moaA 1124714..1125703 (+) 990 WP_038940273.1 GTP 3',8-cyclase MoaA -
  RI132_RS05250 (RI132_05250) moaB 1125784..1126296 (+) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77091.87 Da        Isoelectric Point: 5.0441

>NTDB_id=807878 RI132_RS05225 WP_011080893.1 1119356..1121386(+) (uvrB) [Vibrio vulnificus strain GCU-01]
MSKLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLH
IRRGDVMDQRDILRRLAELQYSRNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLP
RFTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADSITK
SMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEIT
KLEAQMYKHAQDLEFELAAQKRDEIEKLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=807878 RI132_RS05225 WP_011080893.1 1119356..1121386(+) (uvrB) [Vibrio vulnificus strain GCU-01]
ATGAGCAAACTTTACGATCTGGTTTCTGACTATGCGCCATCGGGAGATCAACCAACGGCGATCAAACAACTGACAGAAGG
GTTAGATGCTGGCTTGGCTCACCAAACCTTACTTGGGGTGACGGGATCCGGTAAAACATTTACTTTGGCGAATGTGATTG
CTCAAGCACAACGTCCTGCAATTCTGCTCGCGCCAAACAAAACTCTTGCCGCCCAACTTTACGGCGAGATGAAAGCGTTT
TTCCCCAATAACGCGGTCGAATATTTTGTCTCTTACTACGATTATTACCAACCTGAAGCCTATGTGCCAACCACCGACAC
CTTTATAGAGAAGGACTCATCGGTCAACGCTCATATTGAACAAATGCGTTTATCGGCCACCAAAGCGTTATTGGAGCGAA
AAGACGCTATTATCGTCGCCTCTGTTTCGGCTATTTATGGTTTGGGTGATCCCGAGGCCTACCTGCAAATGATGTTGCAT
ATACGCCGTGGTGATGTGATGGATCAACGCGACATACTGCGCCGTTTGGCTGAGCTGCAATATAGCCGTAACGATATTGC
TTTTGAACGAGGCCAATTTCGCGTGCGCGGAGAGGTGATCGACGTTTTTCCGGCTGAATCGGACCAAGATGCGGTGCGCA
TCGAGATGTTTGATGATGAGATCGACTGCATCAGTGTGTTTGATCCACTGACCGGAGTGGTCAAACAACGCGATTTACCC
CGCTTTACTATTTACCCTAAGACTCACTACGTCACACCTCGAGAGCGTATTCTGCAGGCGATTGAAAACATCAAACAAGA
GCTGCGTGAGCGACAAACTTACTTGCGTGACAACAATAAATTGTTGGAAGAGCAACGTATTAGTCAGCGTACCCAATTCG
ATATTGAAATGATGAATGAGCTGGGATTCTGCTCTGGCATCGAAAACTACTCGCGTTACCTCAGCGGTCGAGCGGAAGGT
GAGCCGCCTCCAACGTTATTTGACTACTTACCACACGACGGTTTGTTGATCATTGATGAATCTCACGTGACAGTGCCACA
AATTGGCGCAATGTATAAAGGTGACCGCTCACGGAAAGAGACCTTGGTTGAATATGGTTTCCGTTTGCCTTCAGCATTGG
ACAATCGACCATTGAAATTTGAAGAGTTCGAAGCGCTTGCGCCACAAACTATTTTCGTTTCAGCCACTCCGGGTAATTAC
GAACTAGAGAAAAGTGCGGGCGAAATTGCTGACCAAGTGGTGCGTCCGACCGGATTGCTCGATCCTGTACTGGAAGTGCG
ACCAGTGGCGACTCAAGTGGATGATCTGCTTTCTGAGATCCGCATTCGCGCAGTGAAAGATGAACGCGTGTTAGTGACAA
CACTGACCAAACGTATGGCGGAAGATCTAACTGAATACTTGCATGAGCACGATGTGAAAGTGCGTTACCTACACTCTGAT
ATCGACACGGTTGAACGAGTGGAGATCATTCGTGACTTGAGGCTAGGGGAGTTCGATGTGTTGGTGGGGATTAACTTGTT
ACGCGAGGGCCTCGACATGCCCGAAGTGTCTTTGGTTGCGATTCTCGATGCTGATAAAGAAGGCTTTTTACGTTCAGAGC
GCTCATTGATTCAGACCATTGGCCGTGCAGCCCGTAACCTCCATGGTAAAGCGATCTTGTATGCAGACTCCATCACCAAA
TCGATGAAGAAAGCGATGGATGAAACGGAACGACGCCGTGAGAAACAGCAAGCGTACAATGAAAAGATGGGCATTCAGCC
TCAAGCCTTGAAGCGTAATATCAAAGATATTATGGAGCTGGGCGATATTACGAAATCTCGCAAGCAGAAAGTGAGCAAAA
CGGTGCCATTGTCGAAAGTGGCTGAACCATCACTGTCCTATAATGTGTTGACGCCACAACAACTGGAAAAAGAAATCACA
AAACTGGAAGCGCAAATGTACAAACATGCTCAGGATTTGGAATTTGAGTTAGCCGCGCAGAAACGTGATGAAATTGAAAA
GTTGCGTCAGCAGTTTATTGCTAACAGCTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-250)

Type III restriction enzyme, res subunit (ResIII)

(16-138)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

UvrB/uvrC motif (UVR)

(636-671)

Ultra-violet resistance protein B (UvrB)

(553-594)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MM80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae R6

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae D39

56.297

97.485

0.549