Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RI132_RS02875 Genome accession   NZ_CP134783
Coordinates   606932..607657 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain GCU-01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601932..612657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS02850 (RI132_02850) sltY 601963..603918 (+) 1956 WP_130190866.1 murein transglycosylase -
  RI132_RS02855 (RI132_02855) trpR 603934..604242 (+) 309 WP_011078578.1 trp operon repressor -
  RI132_RS02860 (RI132_02860) yjjX 604273..604809 (-) 537 WP_039552773.1 inosine/xanthosine triphosphatase -
  RI132_RS02865 (RI132_02865) pheA 604834..606012 (-) 1179 WP_011078576.1 prephenate dehydratase -
  RI132_RS02870 (RI132_02870) hpf 606256..606579 (-) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RI132_RS02875 (RI132_02875) comL 606932..607657 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  RI132_RS02880 (RI132_02880) rluD 607794..608771 (+) 978 WP_130190867.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RI132_RS02885 (RI132_02885) pgeF 608775..609491 (+) 717 WP_207223228.1 peptidoglycan editing factor PgeF -
  RI132_RS02890 (RI132_02890) clpC 609609..612182 (+) 2574 WP_045596288.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=807866 RI132_RS02875 WP_011078574.1 606932..607657(-) (comL) [Vibrio vulnificus strain GCU-01]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=807866 RI132_RS02875 WP_011078574.1 606932..607657(-) (comL) [Vibrio vulnificus strain GCU-01]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATAGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAAAAAATGGACTGGGTGCT
GTACATGCGTGGTCTCACCCATATGGCACAAGATCGTAACTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGACGCCATCGCACGCACCGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39