Detailed information NTG0807867

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RI132_RS02890
• Genome accession: NZ_CP134783
• Coordinates: 609609..612182 (+)
• Length: 857 a.a.
• NCBI ID: WP_045596288.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain GCU-01
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 604609..617182

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI132_RS02865 (RI132_02865)	pheA	604834..606012 (-)	1179	WP_011078576.1	prephenate dehydratase	-
RI132_RS02870 (RI132_02870)	hpf	606256..606579 (-)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
RI132_RS02875 (RI132_02875)	comL	606932..607657 (-)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
RI132_RS02880 (RI132_02880)	rluD	607794..608771 (+)	978	WP_130190867.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
RI132_RS02885 (RI132_02885)	pgeF	608775..609491 (+)	717	WP_207223228.1	peptidoglycan editing factor PgeF	-
RI132_RS02890 (RI132_02890)	clpC	609609..612182 (+)	2574	WP_045596288.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96066.97 Da
• Isoelectric Point: 5.2933

>NTDB_id=807867 RI132_RS02890 WP_045596288.1 609609..612182(+) (clpC) [Vibrio vulnificus strain GCU-01]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKAL
ELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=807867 RI132_RS02890 WP_045596288.1 609609..612182(+) (clpC) [Vibrio vulnificus strain GCU-01]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATATATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAACGGCAGCCCTATTCGTCCACTGCTGACCATCTTAA
ATGTGGATGTCACTCACCTACGTTCAAAACTCAGCGAAATGCTGGATCGTTTGCCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTCTCCTCAGCCATGGGCGCGATGTTTAACCTGTGCGATAAAATTGCACAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGACCACTTGGTCAGCTCTTCAAAGAACTTGGCTTAACTGAAC
AGAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGTGCAGAGCAGGGCAAACTTGACCCTGTGATTGGACGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGAACCAAAAACAACCCCGTGATCATTGGTGAGCCAGGTGTTGGTAAAACCG
CCATTGTTGAAGGTTTAGCACAACGCATCATTAATAACGAGGTGCCTGAAGGTCTGCGTGGTCGCCGAGTGTTGTCACTC
GATATGGGTGCGTTGGTGGCTGGAGCGAAGTACCGTGGTGAATTTGAAGAGCGACTTAAATCGGTATTGAATGAGTTGTC
TAAAGAAGAAGGCAATATCATCCTTTTTATTGATGAACTGCATACCATGGTTGGCGCCGGTAAAGGAGAAGGGTCGATGG
ATGCGGGCAATATGCTCAAACCCGCATTGGCACGTGGTGAGTTACATTGTGTGGGCGCAACGACACTTGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCACTTGAGCGCCGCTTCCAAAAAGTGCTGGTTGATGAACCAACAGTGGAAGACACCAT
TGCAATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCATCATCATGTTGAAATTACCGATCCAGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCAGATAAAGCGATCGACCTCATCGACGAAGCCGCATCCAGT
ATTCGTATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAGTTGGAGCGCAAAATCATCCAACTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCGAGTGAAAAACGTCTGCGCTCACTTAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCCGCGCTGTCTGGCACTCAGCATATTAAAGCCGCGTTAGAG
CAAGCACGCATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGCCGTATTCC
AGAGCTTGAGAAGCAACTTGACCTAGCAACGCAAGCAGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCTAAGCAAACGGGTATCCCCGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAACTGCTT
CGCATGGAAGAGGTGCTGCATAAACGTGTTATTGGGCAGAAAGAGGCGGTGGAAGTTGTTGCGAATGCGATACGTCGCAG
CCGGGCGGGCTTGTCCGATCCCAATAAACCGATTGGTTCGTTCTTATTCTTAGGTCCAACCGGTGTGGGGAAAACGGAAC
TGTGCAAAACGTTAGCGAATTTCATGTTCGACAGTGAAGATGCCATGGTGCGTATCGACATGTCTGAGTTTATGGAGAAA
CACTCAGTGGCACGCTTAGTCGGTGCACCTCCGGGCTATGTGGGTTATGAAGAAGGTGGATATTTAACGGAAGCGGTTCG
ACGTAAGCCTTATTCAGTGATTTTGCTCGATGAAGTGGAAAAGGCACACCCTGATGTGTTCAACATCCTGCTACAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACGGTGGATTTCCGCAATACCGTGGTCATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTGATGGAAGTAGTGACCAA
GCACTTTAGACCGGAGTTTTTGAACCGTGTTGATGAGACAGTGGTCTTCCACCCACTTGGTCAAGACCATATTAAGTCGA
TCGCAGCGATTCAACTTAACCGCTTGGCGAATCGCATGGAAGAGCATGGCTATCAGTTGGAAGTGTCTGATAAAGCGCTC
GAATTGATCGCACAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAAAA
CCCGCTGGCGAAATCTATTTTGGCAGGTTCAGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• AAA lid domain (AAA_lid_9) (342-444)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.828	100	0.474
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.54	100	0.415
clpE	Streptococcus mutans UA159	48.159	79.23	0.382
clpE	Streptococcus pneumoniae D39	48.154	78.996	0.38
clpE	Streptococcus pneumoniae Rx1	48.154	78.996	0.38
clpE	Streptococcus pneumoniae R6	48.154	78.996	0.38
clpC	Lactococcus lactis subsp. cremoris KW2	46.009	80.397	0.37